Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   U6C02_RS07915 Genome accession   NZ_CP143843
Coordinates   1526923..1527612 (+) Length   229 a.a.
NCBI ID   WP_197738786.1    Uniprot ID   -
Organism   Bacillus velezensis strain YM-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1521923..1532612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS07890 (U6C02_07890) degS 1522218..1523381 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  U6C02_RS07895 (U6C02_07895) degU 1523458..1524136 (+) 679 Protein_1491 two-component system response regulator DegU -
  U6C02_RS07900 (U6C02_07900) - 1524234..1525082 (+) 849 WP_003151387.1 DegV family protein -
  U6C02_RS07905 (U6C02_07905) comFA 1525190..1526575 (+) 1386 WP_025853539.1 DEAD/DEAH box helicase Machinery gene
  U6C02_RS07910 (U6C02_07910) - 1526633..1526917 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  U6C02_RS07915 (U6C02_07915) comFC 1526923..1527612 (+) 690 WP_197738786.1 phosphoribosyltransferase family protein Machinery gene
  U6C02_RS07920 (U6C02_07920) - 1527686..1528105 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  U6C02_RS07925 (U6C02_07925) flgM 1528175..1528441 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  U6C02_RS07930 (U6C02_07930) - 1528456..1528938 (+) 483 WP_003151394.1 flagellar protein FlgN -
  U6C02_RS07935 (U6C02_07935) flgK 1528954..1530471 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  U6C02_RS07940 (U6C02_07940) flgL 1530483..1531400 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  U6C02_RS07945 (U6C02_07945) - 1531491..1532060 (+) 570 WP_007407476.1 DUF6470 family protein -
  U6C02_RS07950 (U6C02_07950) fliW 1532090..1532521 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25249.91 Da        Isoelectric Point: 8.4880

>NTDB_id=931503 U6C02_RS07915 WP_197738786.1 1526923..1527612(+) (comFC) [Bacillus velezensis strain YM-3]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGSVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=931503 U6C02_RS07915 WP_197738786.1 1526923..1527612(+) (comFC) [Bacillus velezensis strain YM-3]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCTCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603