Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   U6C02_RS07905 Genome accession   NZ_CP143843
Coordinates   1525190..1526575 (+) Length   461 a.a.
NCBI ID   WP_025853539.1    Uniprot ID   A0A6A8LC10
Organism   Bacillus velezensis strain YM-3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1520190..1531575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U6C02_RS07885 (U6C02_07885) - 1521348..1521995 (-) 648 WP_003151384.1 YigZ family protein -
  U6C02_RS07890 (U6C02_07890) degS 1522218..1523381 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  U6C02_RS07895 (U6C02_07895) degU 1523458..1524136 (+) 679 Protein_1491 two-component system response regulator DegU -
  U6C02_RS07900 (U6C02_07900) - 1524234..1525082 (+) 849 WP_003151387.1 DegV family protein -
  U6C02_RS07905 (U6C02_07905) comFA 1525190..1526575 (+) 1386 WP_025853539.1 DEAD/DEAH box helicase Machinery gene
  U6C02_RS07910 (U6C02_07910) - 1526633..1526917 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  U6C02_RS07915 (U6C02_07915) comFC 1526923..1527612 (+) 690 WP_197738786.1 phosphoribosyltransferase family protein Machinery gene
  U6C02_RS07920 (U6C02_07920) - 1527686..1528105 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  U6C02_RS07925 (U6C02_07925) flgM 1528175..1528441 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  U6C02_RS07930 (U6C02_07930) - 1528456..1528938 (+) 483 WP_003151394.1 flagellar protein FlgN -
  U6C02_RS07935 (U6C02_07935) flgK 1528954..1530471 (+) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  U6C02_RS07940 (U6C02_07940) flgL 1530483..1531400 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52557.14 Da        Isoelectric Point: 10.1848

>NTDB_id=931502 U6C02_RS07905 WP_025853539.1 1525190..1526575(+) (comFA) [Bacillus velezensis strain YM-3]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHCIKRFIEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTLLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=931502 U6C02_RS07905 WP_025853539.1 1525190..1526575(+) (comFA) [Bacillus velezensis strain YM-3]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATTGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATTATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGCACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCTAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6A8LC10

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631