Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   R8561_RS03360 Genome accession   NZ_AP028350
Coordinates   655537..657510 (-) Length   657 a.a.
NCBI ID   WP_023890633.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10420     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 650537..662510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8561_RS03335 (B10420_06520) - 651270..651515 (+) 246 WP_002776417.1 RNA-binding S4 domain-containing protein -
  R8561_RS03340 (B10420_06530) tsaE 651512..651919 (+) 408 WP_002776418.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  R8561_RS03345 (B10420_06540) lptB 651912..652640 (+) 729 WP_002776419.1 LPS export ABC transporter ATP-binding protein -
  R8561_RS03350 (B10420_06550) - 652640..653890 (+) 1251 WP_002781614.1 RNA polymerase factor sigma-54 -
  R8561_RS03355 (B10420_06560) - 654078..655502 (+) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  R8561_RS03360 (B10420_06570) uvrB 655537..657510 (-) 1974 WP_023890633.1 excinuclease ABC subunit UvrB Machinery gene
  R8561_RS03365 (B10420_06580) - 657664..657894 (+) 231 WP_002776426.1 hypothetical protein -
  R8561_RS03370 (B10420_06590) - 657884..658129 (+) 246 WP_002776428.1 hypothetical protein -
  R8561_RS03375 (B10420_06600) Cj0683 658126..658572 (+) 447 WP_002776437.1 type II secretion system protein Machinery gene
  R8561_RS03380 (B10420_06610) - 658569..660407 (+) 1839 WP_002787399.1 primosomal protein N' -
  R8561_RS03385 (B10420_06620) ispG 660467..661540 (+) 1074 WP_233922602.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  R8561_RS03390 (B10420_06630) flgH 661624..662322 (-) 699 WP_002776446.1 flagellar basal body L-ring protein FlgH -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 76103.57 Da        Isoelectric Point: 6.4586

>NTDB_id=93075 R8561_RS03360 WP_023890633.1 655537..657510(-) (uvrB) [Campylobacter coli strain BCH-10420]
MLELTSDFKPSLDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
DMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKVKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRIEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKFEKMPANERAKIVKELRKQMLEAAKALE
FEKAATLRDEINKLKDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=93075 R8561_RS03360 WP_023890633.1 655537..657510(-) (uvrB) [Campylobacter coli strain BCH-10420]
ATGTTAGAACTTACAAGCGATTTTAAACCAAGTCTTGATCAAGAACAAGCAATACAAGGTATTGTCAAAAGCATAAAAAA
AGGTAATAAATATCAAACCCTACTCGGCGTAACAGGAAGCGGAAAGACTTTTACCATGGCAAATGTCATAAAAGAACTCA
ATATGCCAACCCTTATCATGAGTCATAACAAAAGCCTTTGCGCCCAGCTTTATAGCGAATTTAAAGGTTTTTTTTCTAAG
AACCATGTGGAATATTTTATTTCTTATTATGATTATTATCAGCCTGAAGCTTATATACCGCGCACCGATGTTTTTATAGA
AAAAGATAGCTCCACAAATGAGGATCTAGAACGCTTAAGACTTAGCGCAACTGCTTCGCTTTTAAGCTATGAGGATGTGG
TTTGTATCGCTAGTGTCTCGGCTAATTATGGACTTGGAAATCCAAATGAATACATAGGAATGGTTTTAATCTTTGAACTA
GACATGCAAATTTCACAAAAAGAACTTTTAAAGAAACTTGTAGACATGGGTTATAAAAGAAATGATAATTTCTTTGATCG
TGCTGATTTTCGCGTACAAGGTGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGTCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGTGTAGGTGAAACAAGACTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGATTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGCGTTGAAAATTATGCAAGACATTTAACAGGGCTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAAATAGGAAATTTCTTGTTATAGTCGATGAAAGCCATGTTTCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTAGATTATGGTTTTCGTCTTCCATCAGCTCTTGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAGATTGTCAGTTTCTTTTTGTTTCAGCCACCCCTGCCCCGCTTGAG
CTTGAACTTAGCAAGGAAAATATCTTTCATCAAATTATGCGTCCAACAGGATTACTTGATCCTTTGATAGAACTTAAAGA
TAGCGATAATCAAGTTGAAATTTTATTTGATGAAGCCAAAAAAGTTATACAAAGAAACGAACGCGTTTTAGTTACTGTGT
TGACTAAAAAACTAGCTGAAGAGCTTACAAGGTATTATTTAGAACTTGGTATTAAAGTAAAATACATGCATTCAGATATT
GATGCAATAGAACGCAATGAAATCATAAGAGGCTTAAGAAGCGGTGCTTTTGATATGTTAATAGGTATAAATTTACTTAG
AGAAGGACTTGATTTGCCTGAGGTTTCGCTTATTGCCATTATGGACGCAGATAAGGAGGGTTTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCTGCTAGAAATGTCAATGGTAAAGTTTTACTCTTTTGCAAAAAGATTACAAAATCC
ATGCAAGAAGCTATGGATACTACAAATGAGCGTCGCAAACTTCAAGAAGCTTACAATCAAAAACATAACATCACCCCAAC
TTCAGTCAAGCGACACATCGAAGAAAGTTTAAAAAATGAAGAAAACTTAGGAGAAATTTATCGCAAAGGTAAAAAATTTG
AAAAAATGCCTGCTAATGAAAGAGCTAAAATCGTAAAAGAGCTTCGTAAACAAATGCTTGAAGCTGCTAAAGCGCTCGAA
TTTGAAAAAGCAGCAACTTTAAGAGATGAGATCAATAAATTAAAAGATTTATAG

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-246)

UvrB/uvrC motif (UVR)

(623-656)

Type III restriction enzyme, res subunit (ResIII)

(9-116)

Ultra-violet resistance protein B (UvrB)

(552-593)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae D39

50.305

99.848

0.502