Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | SNM_RS03305 | Genome accession | NZ_AP025613 |
| Coordinates | 577377..577958 (-) | Length | 193 a.a. |
| NCBI ID | WP_011173434.1 | Uniprot ID | Q72IW6 |
| Organism | Thermus thermophilus strain SNM6-6 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 572377..582958
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SNM_RS03285 (TthSNM66_06400) | - | 572443..572997 (-) | 555 | WP_008632876.1 | shikimate kinase | - |
| SNM_RS03290 (TthSNM66_06410) | aroC | 573022..574173 (-) | 1152 | WP_011228640.1 | chorismate synthase | - |
| SNM_RS03295 (TthSNM66_06420) | pilQ | 574232..576505 (-) | 2274 | WP_244347033.1 | secretin N-terminal domain-containing protein | Machinery gene |
| SNM_RS03300 (TthSNM66_06430) | pilW | 576502..577380 (-) | 879 | WP_244344967.1 | competence protein | Machinery gene |
| SNM_RS03305 (TthSNM66_06440) | pilO | 577377..577958 (-) | 582 | WP_011173434.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| SNM_RS03310 (TthSNM66_06450) | pilN | 577948..578571 (-) | 624 | WP_011173433.1 | competence protein | Machinery gene |
| SNM_RS03315 (TthSNM66_06460) | pilM | 578564..579697 (-) | 1134 | WP_011173432.1 | type IV pilus assembly protein PilM | Machinery gene |
| SNM_RS03320 (TthSNM66_06470) | - | 579832..580836 (-) | 1005 | WP_011173431.1 | homoisocitrate dehydrogenase | - |
| SNM_RS03325 (TthSNM66_06480) | - | 580891..581382 (-) | 492 | WP_011173430.1 | DUF5317 domain-containing protein | - |
| SNM_RS03330 (TthSNM66_06500) | - | 581433..582869 (-) | 1437 | WP_223965606.1 | HD domain-containing phosphohydrolase | - |
Sequence
Protein
Download Length: 193 a.a. Molecular weight: 21368.70 Da Isoelectric Point: 8.4290
>NTDB_id=93035 SNM_RS03305 WP_011173434.1 577377..577958(-) (pilO) [Thermus thermophilus strain SNM6-6]
MLARLGQREWALLAMVLTALLGLLWYYLLIVPTRQEIATVRQEIDRLTIERNRGLQARRALPELRATIAALQAQRLAFLR
ALPREERLAEVLSEVLQDAEASGVVVRSFTRSRTSAPVPEVRAVNLALALEAPFPETYAYLRRLEDLSRFSTLSGLNLSV
QSQEANPTLATSLTLTVYVLAQGVEAETGGSTP
MLARLGQREWALLAMVLTALLGLLWYYLLIVPTRQEIATVRQEIDRLTIERNRGLQARRALPELRATIAALQAQRLAFLR
ALPREERLAEVLSEVLQDAEASGVVVRSFTRSRTSAPVPEVRAVNLALALEAPFPETYAYLRRLEDLSRFSTLSGLNLSV
QSQEANPTLATSLTLTVYVLAQGVEAETGGSTP
Nucleotide
Download Length: 582 bp
>NTDB_id=93035 SNM_RS03305 WP_011173434.1 577377..577958(-) (pilO) [Thermus thermophilus strain SNM6-6]
GTGCTCGCTAGGCTGGGACAGCGGGAGTGGGCCCTCCTGGCCATGGTCCTCACCGCCCTCCTGGGGCTCCTCTGGTACTA
CCTGCTCATCGTGCCCACGAGGCAGGAGATCGCCACCGTCCGGCAGGAGATTGACCGCCTCACCATAGAGCGCAACCGCG
GGCTCCAGGCCCGCCGGGCCCTTCCCGAGCTCCGCGCCACCATCGCCGCCCTTCAGGCCCAAAGGCTCGCCTTCCTCCGG
GCCCTGCCCCGGGAGGAAAGGCTCGCCGAGGTCCTCTCCGAGGTGCTCCAGGACGCGGAGGCGAGCGGGGTGGTGGTCCG
AAGCTTCACCCGAAGCCGCACCTCGGCCCCGGTGCCCGAGGTGCGGGCCGTGAACCTGGCCCTGGCCCTCGAGGCCCCCT
TCCCCGAAACCTACGCCTACCTGCGGCGCCTGGAGGACCTCTCCCGCTTCAGCACCCTTTCCGGCCTCAACCTGAGCGTC
CAGAGCCAGGAAGCGAACCCCACCCTCGCCACCAGCCTCACCTTGACCGTCTACGTGCTGGCCCAGGGGGTGGAGGCGGA
AACGGGAGGGAGCACCCCATGA
GTGCTCGCTAGGCTGGGACAGCGGGAGTGGGCCCTCCTGGCCATGGTCCTCACCGCCCTCCTGGGGCTCCTCTGGTACTA
CCTGCTCATCGTGCCCACGAGGCAGGAGATCGCCACCGTCCGGCAGGAGATTGACCGCCTCACCATAGAGCGCAACCGCG
GGCTCCAGGCCCGCCGGGCCCTTCCCGAGCTCCGCGCCACCATCGCCGCCCTTCAGGCCCAAAGGCTCGCCTTCCTCCGG
GCCCTGCCCCGGGAGGAAAGGCTCGCCGAGGTCCTCTCCGAGGTGCTCCAGGACGCGGAGGCGAGCGGGGTGGTGGTCCG
AAGCTTCACCCGAAGCCGCACCTCGGCCCCGGTGCCCGAGGTGCGGGCCGTGAACCTGGCCCTGGCCCTCGAGGCCCCCT
TCCCCGAAACCTACGCCTACCTGCGGCGCCTGGAGGACCTCTCCCGCTTCAGCACCCTTTCCGGCCTCAACCTGAGCGTC
CAGAGCCAGGAAGCGAACCCCACCCTCGCCACCAGCCTCACCTTGACCGTCTACGTGCTGGCCCAGGGGGTGGAGGCGGA
AACGGGAGGGAGCACCCCATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Thermus thermophilus HB27 |
100 |
100 |
1 |