Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   SNM_RS03300 Genome accession   NZ_AP025613
Coordinates   576502..577380 (-) Length   292 a.a.
NCBI ID   WP_244344967.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM6-6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 571502..582380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNM_RS03285 (TthSNM66_06400) - 572443..572997 (-) 555 WP_008632876.1 shikimate kinase -
  SNM_RS03290 (TthSNM66_06410) aroC 573022..574173 (-) 1152 WP_011228640.1 chorismate synthase -
  SNM_RS03295 (TthSNM66_06420) pilQ 574232..576505 (-) 2274 WP_244347033.1 secretin N-terminal domain-containing protein Machinery gene
  SNM_RS03300 (TthSNM66_06430) pilW 576502..577380 (-) 879 WP_244344967.1 competence protein Machinery gene
  SNM_RS03305 (TthSNM66_06440) pilO 577377..577958 (-) 582 WP_011173434.1 type 4a pilus biogenesis protein PilO Machinery gene
  SNM_RS03310 (TthSNM66_06450) pilN 577948..578571 (-) 624 WP_011173433.1 competence protein Machinery gene
  SNM_RS03315 (TthSNM66_06460) pilM 578564..579697 (-) 1134 WP_011173432.1 type IV pilus assembly protein PilM Machinery gene
  SNM_RS03320 (TthSNM66_06470) - 579832..580836 (-) 1005 WP_011173431.1 homoisocitrate dehydrogenase -
  SNM_RS03325 (TthSNM66_06480) - 580891..581382 (-) 492 WP_011173430.1 DUF5317 domain-containing protein -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 29863.40 Da        Isoelectric Point: 4.6515

>NTDB_id=93034 SNM_RS03300 WP_244344967.1 576502..577380(-) (pilW) [Thermus thermophilus strain SNM6-6]
MKNAWQRLKEAWANLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAEAPTPAPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPASSQEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPTPVPEGPAVRVQTPAPAPQAAPATRPIPG
TSGALPAPKILSPALSAPLPQARETPPRVAVPTALVEAPLPGPEEKGAEKAPTPASPLERLVAEKGLRLSGTLLGPVSVA
ILESKEGYLVVPVGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 879 bp        

>NTDB_id=93034 SNM_RS03300 WP_244344967.1 576502..577380(-) (pilW) [Thermus thermophilus strain SNM6-6]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGCCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCGCTTCTTCCCAAGAGGAGGCCCAGGCGCCCCCGCCTGCCCCCGTGGCCCGGGCCGAGCC
CCCGCCCCCGAACCCCTTCGTCCCCCTGGTGGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCACGCCCG
TCCCCGAGGGGCCCGCCGTCCGGGTCCAGACCCCTGCCCCGGCCCCCCAGGCGGCCCCCGCCACCCGGCCCATCCCCGGG
ACCTCCGGCGCCCTCCCGGCGCCCAAGATCCTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAGACGCCGCC
TAGGGTCGCCGTGCCCACGGCGCTCGTGGAGGCCCCCCTCCCCGGGCCCGAGGAAAAGGGGGCGGAGAAGGCCCCCACCC
CGGCCTCGCCGCTGGAGCGCCTGGTGGCGGAAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTGAGCGTGGCC
ATCCTGGAGAGCAAGGAGGGCTACCTCGTGGTCCCTGTGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCAGGT
GGAGGAAGGAAGCGTGACCCTGGCCTTGAAGGAGGAAACCTTGAACCTGTCCCTCGTCCAAGCTGGAGGTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

99.315

100

0.993

Multiple sequence alignment