Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   VP472_RS17340 Genome accession   NZ_CP143632
Coordinates   3492603..3493292 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus sp. MT(2024)     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3487603..3498292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP472_RS17305 (VP472_17305) - 3487801..3488283 (-) 483 WP_003151394.1 flagellar protein FlgN -
  VP472_RS17310 (VP472_17310) flgM 3488298..3488564 (-) 267 WP_146275630.1 flagellar biosynthesis anti-sigma factor FlgM -
  VP472_RS17315 (VP472_17315) - 3488634..3489053 (-) 420 WP_146275632.1 TIGR03826 family flagellar region protein -
  VP472_RS17320 (VP472_17320) comFC 3489127..3489816 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  VP472_RS17325 (VP472_17325) - 3489822..3490106 (-) 285 WP_017418816.1 competence protein ComFB -
  VP472_RS17330 (VP472_17330) comFA 3490164..3491549 (-) 1386 WP_146275634.1 DEAD/DEAH box helicase Machinery gene
  VP472_RS17335 (VP472_17335) - 3491657..3492505 (-) 849 WP_003151387.1 DegV family protein -
  VP472_RS17340 (VP472_17340) degU 3492603..3493292 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VP472_RS17345 (VP472_17345) degS 3493369..3494532 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  VP472_RS17350 (VP472_17350) - 3494755..3495402 (+) 648 WP_060657503.1 YigZ family protein -
  VP472_RS17355 (VP472_17355) - 3495407..3496582 (+) 1176 WP_146275636.1 LCP family protein -
  VP472_RS17360 (VP472_17360) - 3496672..3497748 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=930063 VP472_RS17340 WP_003219701.1 3492603..3493292(-) (degU) [Bacillus sp. MT(2024)]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=930063 VP472_RS17340 WP_003219701.1 3492603..3493292(-) (degU) [Bacillus sp. MT(2024)]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1