Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   VP472_RS17320 Genome accession   NZ_CP143632
Coordinates   3489127..3489816 (-) Length   229 a.a.
NCBI ID   WP_202980098.1    Uniprot ID   -
Organism   Bacillus sp. MT(2024)     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3484127..3494816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP472_RS17285 (VP472_17285) fliW 3484218..3484649 (-) 432 WP_060657507.1 flagellar assembly protein FliW -
  VP472_RS17290 (VP472_17290) - 3484679..3485248 (-) 570 WP_003151397.1 DUF6470 family protein -
  VP472_RS17295 (VP472_17295) flgL 3485339..3486256 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  VP472_RS17300 (VP472_17300) flgK 3486268..3487785 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  VP472_RS17305 (VP472_17305) - 3487801..3488283 (-) 483 WP_003151394.1 flagellar protein FlgN -
  VP472_RS17310 (VP472_17310) flgM 3488298..3488564 (-) 267 WP_146275630.1 flagellar biosynthesis anti-sigma factor FlgM -
  VP472_RS17315 (VP472_17315) - 3488634..3489053 (-) 420 WP_146275632.1 TIGR03826 family flagellar region protein -
  VP472_RS17320 (VP472_17320) comFC 3489127..3489816 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  VP472_RS17325 (VP472_17325) - 3489822..3490106 (-) 285 WP_017418816.1 competence protein ComFB -
  VP472_RS17330 (VP472_17330) comFA 3490164..3491549 (-) 1386 WP_146275634.1 DEAD/DEAH box helicase Machinery gene
  VP472_RS17335 (VP472_17335) - 3491657..3492505 (-) 849 WP_003151387.1 DegV family protein -
  VP472_RS17340 (VP472_17340) degU 3492603..3493292 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VP472_RS17345 (VP472_17345) degS 3493369..3494532 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25273.98 Da        Isoelectric Point: 8.4880

>NTDB_id=930061 VP472_RS17320 WP_202980098.1 3489127..3489816(-) (comFC) [Bacillus sp. MT(2024)]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCTICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=930061 VP472_RS17320 WP_202980098.1 3489127..3489816(-) (comFC) [Bacillus sp. MT(2024)]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCACTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603