Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   VP472_RS17330 Genome accession   NZ_CP143632
Coordinates   3490164..3491549 (-) Length   461 a.a.
NCBI ID   WP_146275634.1    Uniprot ID   -
Organism   Bacillus sp. MT(2024)     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3485164..3496549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP472_RS17295 (VP472_17295) flgL 3485339..3486256 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  VP472_RS17300 (VP472_17300) flgK 3486268..3487785 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  VP472_RS17305 (VP472_17305) - 3487801..3488283 (-) 483 WP_003151394.1 flagellar protein FlgN -
  VP472_RS17310 (VP472_17310) flgM 3488298..3488564 (-) 267 WP_146275630.1 flagellar biosynthesis anti-sigma factor FlgM -
  VP472_RS17315 (VP472_17315) - 3488634..3489053 (-) 420 WP_146275632.1 TIGR03826 family flagellar region protein -
  VP472_RS17320 (VP472_17320) comFC 3489127..3489816 (-) 690 WP_202980098.1 phosphoribosyltransferase family protein Machinery gene
  VP472_RS17325 (VP472_17325) - 3489822..3490106 (-) 285 WP_017418816.1 competence protein ComFB -
  VP472_RS17330 (VP472_17330) comFA 3490164..3491549 (-) 1386 WP_146275634.1 DEAD/DEAH box helicase Machinery gene
  VP472_RS17335 (VP472_17335) - 3491657..3492505 (-) 849 WP_003151387.1 DegV family protein -
  VP472_RS17340 (VP472_17340) degU 3492603..3493292 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VP472_RS17345 (VP472_17345) degS 3493369..3494532 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  VP472_RS17350 (VP472_17350) - 3494755..3495402 (+) 648 WP_060657503.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52535.97 Da        Isoelectric Point: 10.1928

>NTDB_id=930062 VP472_RS17330 WP_146275634.1 3490164..3491549(-) (comFA) [Bacillus sp. MT(2024)]
MAEGASEFSEVRDFFYGRHLLRAEIPFSDQRINRFIEKEYITAEPSIIRRKNRYICQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENSWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGMTNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=930062 VP472_RS17330 WP_146275634.1 3490164..3491549(-) (comFA) [Bacillus sp. MT(2024)]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGACATTTATTGAGAGCTGAGATACCGTT
TTCAGATCAGCGCATCAACCGTTTTATAGAAAAAGAGTATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACATCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATCACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCGTTATATTCTTGGAATCAAGCCCCTGAAAACAG
CTGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGTTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAATGCTGAAGCCGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCTCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAGGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACGTAAGGGCAGAGGGCGTGCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTAGATCTGCTGGTAACAACTACGATTTTAGAAAGAGGAGTTACCGTACCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATGACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.043

99.783

0.629
  comFA Latilactobacillus sakei subsp. sakei 23K

38.409

95.445

0.367