Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VYI69_RS20225 Genome accession   NZ_CP143576
Coordinates   4486947..4489238 (-) Length   763 a.a.
NCBI ID   WP_330566048.1    Uniprot ID   -
Organism   Pseudomonas yamanorum strain SFB8.6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4481947..4494238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VYI69_RS20190 (VYI69_20190) murB 4482394..4483413 (-) 1020 WP_330564430.1 UDP-N-acetylmuramate dehydrogenase -
  VYI69_RS20195 (VYI69_20195) - 4483410..4483874 (-) 465 WP_017475823.1 low molecular weight protein-tyrosine-phosphatase -
  VYI69_RS20200 (VYI69_20200) kdsB 4483874..4484638 (-) 765 WP_008434982.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VYI69_RS20205 (VYI69_20205) - 4484635..4484820 (-) 186 WP_003174668.1 Trm112 family protein -
  VYI69_RS20210 (VYI69_20210) lpxK 4484845..4485855 (-) 1011 WP_330564431.1 tetraacyldisaccharide 4'-kinase -
  VYI69_RS20215 (VYI69_20215) - 4485855..4486283 (-) 429 WP_004371361.1 ExbD/TolR family protein -
  VYI69_RS20220 (VYI69_20220) exbB 4486280..4486915 (-) 636 WP_063033914.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VYI69_RS20225 (VYI69_20225) comA 4486947..4489238 (-) 2292 WP_330566048.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VYI69_RS20230 (VYI69_20230) - 4489386..4489901 (+) 516 WP_017475829.1 DUF2062 domain-containing protein -
  VYI69_RS20235 (VYI69_20235) - 4489905..4491275 (-) 1371 WP_330564432.1 sensor histidine kinase -
  VYI69_RS20240 (VYI69_20240) - 4491262..4491990 (-) 729 WP_017475831.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 763 a.a.        Molecular weight: 83093.60 Da        Isoelectric Point: 10.0941

>NTDB_id=929788 VYI69_RS20225 WP_330566048.1 4486947..4489238(-) (comA) [Pseudomonas yamanorum strain SFB8.6]
MFALALGLLALRFLPALPSSGWLLLMPVLALMLLPFRTYPLAFFLLGLGWACLSAQWALDDRLAPRLDGQTRWVEGRVSG
LPQQTGDGVRFELTDSRSRKDLLPKRIRVSWRGGPAVQSGERWRLAVTLKRPSGLLNAEGFDYEAWLLAQRIGATGSVKD
GQKLAPARHAWRDGIRQRLLAADAQGREAGLAALVLGDGSGLAAEDWRVLQDTGTVHLLVISGQHIGLLAGLIYGLVAGL
ARFGCWPKPLPWLPWACGLGFAAALGYGLLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLILEPLASLQ
PGFWLSFAAVAVLILAFSGRLGPWRVWQAWTRAQWLIAIGLFPLLLVLGLPISLSGPLANLVAVPWISLVVLPLALLGTV
LLPLPYIGEGLLWLAGGTLDWLFKALALLAQYVPAWIPAQVPMGYWLVSLMGAVLLLLPKGVPFRLLGWPMLLLAVFPPR
ESIPHGRVEVVQLDVGQGLAIILRTRNHVLLYDAGPRSGEFDLGARVVLPALRKLGVAGLDMMLLSHADADHAGGALAVA
HGLPIKRVVGGETERLPAALGTQACVSGERWDWDGVTFELWQWPDATDGNQMSCVLLVQANGERLLLTGDIDREAERALL
ATPLGAPVDWLQAPHHGSRSSSSWPFLQRLAPKAVLISRGRSNAFGHPHPHVLERYQAVGSLIYDSAEQGAIRLQLGTFQ
PPQAVRSQRRFWREPLPQNSVTKDWPLRQDALGPASPSAGPLW

Nucleotide


Download         Length: 2292 bp        

>NTDB_id=929788 VYI69_RS20225 WP_330566048.1 4486947..4489238(-) (comA) [Pseudomonas yamanorum strain SFB8.6]
ATGTTCGCACTCGCGCTGGGGCTGCTCGCCCTGCGTTTTTTACCTGCGTTGCCGTCCAGCGGCTGGCTGCTGCTGATGCC
GGTGTTGGCCCTGATGCTGCTGCCTTTTCGCACCTATCCGCTGGCGTTTTTCCTGCTCGGGCTGGGCTGGGCGTGCCTGA
GTGCGCAGTGGGCGCTGGACGACCGGCTGGCGCCGCGTCTGGATGGCCAGACCCGCTGGGTGGAGGGGCGTGTCAGCGGG
TTGCCGCAGCAGACAGGCGACGGTGTTCGCTTTGAACTGACCGACAGCCGGTCACGCAAGGACCTGCTTCCGAAGCGCAT
CCGTGTGTCCTGGCGTGGCGGGCCAGCGGTTCAGAGCGGTGAGCGCTGGCGGTTGGCCGTGACCCTCAAGCGTCCCTCCG
GTTTGCTTAATGCCGAGGGGTTTGACTATGAAGCCTGGCTGCTGGCCCAGCGGATTGGCGCCACGGGTTCGGTCAAGGAT
GGCCAGAAGCTGGCGCCTGCGCGGCATGCCTGGCGCGACGGAATTCGCCAGCGGCTGTTGGCAGCGGATGCCCAAGGGCG
AGAGGCGGGCCTGGCGGCGCTGGTGCTCGGGGATGGTTCCGGGCTGGCCGCCGAGGATTGGCGGGTTCTGCAAGACACCG
GCACCGTGCATTTATTGGTGATTTCCGGGCAACATATTGGGCTGCTAGCAGGGTTGATCTATGGCCTGGTCGCCGGCCTG
GCGCGCTTCGGGTGTTGGCCGAAACCCTTGCCGTGGCTGCCCTGGGCCTGCGGCCTGGGGTTTGCTGCGGCGCTGGGCTA
TGGCTTGCTGGCCGGTTTTGAAGTGCCGGTGCAACGGGCCTGCGTGATGGTGGGATTGGTCCTGCTATGGCGCCTGCGGT
TTCGTCACTTGGGGATCTGGTGGCCGCTGTTGCTGGCGCTGAACGCGGTGCTCATCCTCGAACCGCTGGCCAGCCTGCAA
CCGGGGTTCTGGCTGTCCTTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTCAGTGGCCGACTGGGCCCCTGGCGTGTCTG
GCAGGCCTGGACCCGGGCCCAGTGGTTGATTGCCATCGGCCTGTTTCCGCTGCTGCTGGTGCTCGGTTTGCCCATCAGCC
TGAGCGGGCCGCTGGCCAACCTGGTTGCGGTGCCGTGGATCAGCCTGGTGGTGTTGCCCCTGGCCTTGCTGGGTACGGTG
TTATTGCCGCTGCCTTATATAGGTGAAGGTTTGTTATGGCTGGCGGGCGGCACACTGGACTGGCTGTTCAAGGCCTTGGC
GTTGCTGGCGCAGTACGTGCCGGCCTGGATACCGGCGCAAGTGCCCATGGGCTATTGGCTGGTGAGCCTGATGGGGGCGG
TGCTGTTATTGCTGCCCAAGGGCGTGCCGTTTCGGCTGCTGGGCTGGCCGATGTTGCTGCTGGCGGTGTTTCCGCCTCGG
GAGTCGATCCCTCACGGACGCGTCGAGGTGGTGCAACTGGATGTCGGCCAAGGGTTGGCGATCATCCTGCGTACCCGCAA
CCACGTTCTGCTCTATGACGCCGGGCCGCGCTCCGGTGAGTTCGACCTTGGCGCGCGCGTGGTATTGCCTGCGTTGCGCA
AACTGGGTGTCGCGGGGCTGGACATGATGCTGCTCAGTCATGCCGATGCCGATCATGCCGGTGGTGCGTTGGCGGTTGCC
CACGGGTTGCCGATCAAGCGCGTGGTGGGCGGCGAGACCGAACGGCTGCCGGCGGCACTCGGTACTCAAGCCTGCGTCAG
TGGCGAGCGGTGGGATTGGGATGGCGTGACCTTCGAGCTGTGGCAATGGCCTGATGCGACGGACGGTAATCAGATGTCCT
GTGTGTTGCTGGTGCAGGCCAATGGCGAACGGTTGCTGCTGACCGGTGATATTGACCGTGAAGCCGAGCGGGCATTGCTG
GCCACCCCCCTGGGGGCTCCTGTCGATTGGTTGCAGGCGCCGCACCATGGCAGCCGCAGCTCGTCTTCATGGCCGTTTCT
ACAGCGCCTTGCACCCAAGGCTGTCCTGATTTCCCGTGGCCGCAGCAATGCCTTCGGCCATCCCCATCCCCACGTACTGG
AGCGTTACCAGGCCGTAGGCAGCCTGATTTATGACAGCGCCGAGCAAGGCGCAATCCGCCTGCAACTGGGCACCTTCCAG
CCGCCGCAGGCCGTGCGCAGCCAGCGGCGTTTCTGGCGCGAGCCCCTGCCGCAAAACAGCGTTACCAAAGACTGGCCCCT
GCGACAGGATGCTCTGGGGCCGGCCAGCCCTTCCGCCGGACCCTTATGGTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(16-163)

Competence protein (Competence)

(194-458)

Metallo-beta-lactamase superfamily (Lactamase_B)

(494-662)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.892

94.233

0.583
  comA Ralstonia pseudosolanacearum GMI1000

35.528

100

0.375