Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   V2I71_RS17550 Genome accession   NZ_CP143575
Coordinates   3698043..3699128 (-) Length   361 a.a.
NCBI ID   WP_372464768.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain GR2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3693043..3704128
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V2I71_RS17510 (V2I71_17510) - 3693912..3694709 (+) 798 WP_048688306.1 YqhG family protein -
  V2I71_RS17515 (V2I71_17515) - 3694753..3694938 (-) 186 WP_057278811.1 YqzE family protein -
  V2I71_RS17520 (V2I71_17520) comGG 3695054..3695440 (-) 387 WP_053535692.1 competence type IV pilus minor pilin ComGG -
  V2I71_RS17525 (V2I71_17525) comGF 3695433..3695912 (-) 480 WP_330501311.1 competence type IV pilus minor pilin ComGF -
  V2I71_RS17530 (V2I71_17530) - 3695860..3696198 (-) 339 WP_098186575.1 hypothetical protein -
  V2I71_RS17535 (V2I71_17535) comGD 3696185..3696628 (-) 444 WP_330501312.1 competence type IV pilus minor pilin ComGD -
  V2I71_RS17540 (V2I71_17540) comGC 3696636..3696947 (-) 312 WP_034308384.1 competence type IV pilus major pilin ComGC -
  V2I71_RS17545 (V2I71_17545) comGB 3697025..3698059 (-) 1035 WP_330501313.1 competence type IV pilus assembly protein ComGB -
  V2I71_RS17550 (V2I71_17550) comGA 3698043..3699128 (-) 1086 WP_372464768.1 competence type IV pilus ATPase ComGA Machinery gene
  V2I71_RS17555 (V2I71_17555) - 3699223..3699603 (-) 381 WP_095678573.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  V2I71_RS17560 (V2I71_17560) - 3699819..3700520 (+) 702 WP_034308391.1 helix-turn-helix transcriptional regulator -
  V2I71_RS17565 (V2I71_17565) - 3700606..3700848 (+) 243 WP_034308393.1 DUF2626 domain-containing protein -
  V2I71_RS17570 (V2I71_17570) - 3700901..3702022 (-) 1122 WP_330501314.1 class I SAM-dependent methyltransferase -
  V2I71_RS17575 (V2I71_17575) - 3702288..3702914 (-) 627 WP_098937446.1 MBL fold metallo-hydrolase -
  V2I71_RS17580 (V2I71_17580) - 3703148..3703321 (+) 174 WP_034308396.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 40187.85 Da        Isoelectric Point: 7.8716

>NTDB_id=929749 V2I71_RS17550 WP_372464768.1 3698043..3699128(-) (comGA) [Peribacillus frigoritolerans strain GR2]
MNELISIEKTAEKILTRAIVESASDIHIFFRGEGPHIQFRIDNKLVPQETLSFFEAERLIAHLKFLASMDIGEKRRPQSG
AITINLANQVVGLRLSTLPTAHLESLVIRLIPQQNILPLEQLSLFPNTVQKLIALLKHSHGMLIFTGPTGSGKTTTLYSL
LHHAHEMINRNIITLEDPIENVSEKVLQVQINEKAGITYSVGLKAVLRHDPDVIMVGEVRDAETAKIAVRAALTGHLILT
TMHTRDAQGAISRLLEFGVSLLEVEQTLIGVTAQRLVELRCLPCKGDCALACKMTARNKRASVYELLYGKSLAEVLRIMG
DEKEMATVSYRQLKDEIGKAVAMGYVGSQEYERLVYHETKK

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=929749 V2I71_RS17550 WP_372464768.1 3698043..3699128(-) (comGA) [Peribacillus frigoritolerans strain GR2]
ATGAATGAATTGATATCGATTGAAAAGACCGCAGAAAAAATACTAACCCGTGCCATCGTGGAATCGGCATCGGATATCCA
CATTTTTTTTCGCGGAGAGGGGCCTCACATCCAATTCAGGATAGACAATAAGCTTGTTCCCCAGGAAACATTATCATTCT
TTGAAGCTGAAAGGCTGATCGCCCATTTGAAGTTCCTTGCCTCGATGGATATAGGGGAGAAAAGGAGGCCCCAGAGTGGT
GCCATCACCATCAATTTGGCTAACCAGGTGGTCGGACTCCGCCTTTCCACTTTACCCACTGCCCATCTCGAAAGTTTGGT
CATCCGCTTAATACCCCAACAGAATATCCTTCCTCTAGAACAGTTATCCTTATTTCCAAACACCGTTCAAAAATTGATTG
CACTCCTGAAGCATTCCCATGGCATGCTCATATTTACCGGCCCGACCGGCAGTGGGAAAACCACGACACTATATTCCCTG
CTTCACCACGCCCATGAGATGATCAATCGAAATATCATTACACTTGAAGATCCCATTGAAAATGTATCCGAAAAGGTATT
GCAAGTCCAAATTAATGAAAAGGCGGGCATTACGTATTCAGTCGGCCTAAAAGCTGTTCTGAGGCATGACCCGGACGTGA
TCATGGTTGGGGAAGTCAGGGATGCAGAAACTGCCAAAATCGCCGTCCGTGCCGCATTAACCGGTCATTTGATACTAACG
ACCATGCATACGAGGGACGCCCAGGGCGCCATCTCCAGATTACTGGAATTTGGTGTCAGCTTACTTGAGGTTGAACAGAC
TTTGATTGGCGTGACAGCGCAGCGGCTGGTTGAATTGCGATGTCTTCCGTGTAAAGGGGACTGTGCTTTAGCTTGCAAAA
TGACTGCAAGGAATAAAAGGGCAAGTGTATATGAATTGCTATATGGAAAAAGCCTGGCTGAAGTTCTCCGGATAATGGGA
GATGAAAAAGAAATGGCAACGGTCAGCTACCGCCAATTAAAGGATGAAATCGGAAAAGCGGTTGCGATGGGCTATGTGGG
ATCTCAGGAATATGAACGGCTGGTCTACCATGAAACCAAAAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(13-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

55.932

98.061

0.548
  pilB Haemophilus influenzae 86-028NP

37.644

96.399

0.363
  pilB Haemophilus influenzae Rd KW20

38.806

92.798

0.36