Detailed information
Bioinformatically predicted
Overview
| Name | pilN | Type | Machinery gene |
| Locus tag | MWM06_RS08850 | Genome accession | NZ_AP025596 |
| Coordinates | 1603363..1603986 (+) | Length | 207 a.a. |
| NCBI ID | WP_011228637.1 | Uniprot ID | A0A3P4AP50 |
| Organism | Thermus thermophilus strain SNM1-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1598363..1608986
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MWM06_RS08830 (TthSNM11_17730) | - | 1599091..1600497 (+) | 1407 | WP_244360453.1 | HD domain-containing phosphohydrolase | - |
| MWM06_RS08835 (TthSNM11_17740) | - | 1600548..1601039 (+) | 492 | WP_011173430.1 | DUF5317 domain-containing protein | - |
| MWM06_RS08840 (TthSNM11_17750) | - | 1601094..1602098 (+) | 1005 | WP_244340638.1 | homoisocitrate dehydrogenase | - |
| MWM06_RS08845 (TthSNM11_17760) | pilM | 1602237..1603370 (+) | 1134 | WP_011173432.1 | type IV pilus assembly protein PilM | Machinery gene |
| MWM06_RS08850 (TthSNM11_17770) | pilN | 1603363..1603986 (+) | 624 | WP_011228637.1 | competence protein | Machinery gene |
| MWM06_RS08855 (TthSNM11_17780) | pilO | 1603976..1604557 (+) | 582 | WP_011173434.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| MWM06_RS08860 (TthSNM11_17790) | pilW | 1604554..1605432 (+) | 879 | WP_244360456.1 | competence protein | Machinery gene |
| MWM06_RS08865 (TthSNM11_17800) | pilQ | 1605429..1607702 (+) | 2274 | WP_244360459.1 | secretin N-terminal domain-containing protein | Machinery gene |
| MWM06_RS08870 (TthSNM11_17810) | aroC | 1607761..1608912 (+) | 1152 | WP_011228640.1 | chorismate synthase | - |
Sequence
Protein
Download Length: 207 a.a. Molecular weight: 23063.56 Da Isoelectric Point: 9.7530
>NTDB_id=92961 MWM06_RS08850 WP_011228637.1 1603363..1603986(+) (pilN) [Thermus thermophilus strain SNM1-1]
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGVTGGESGAR
MIRLNLLPKNLRRRVEPGWWRLLALLFALVVLGVLGLVHYTAYTELSLAKAERDQLQAEVEALRPFIAELGRLQEERKAL
EALLAIREGLEKNAVPWSQYLAAFINQIPRAGGRLEVALRSVSARALSEEEAARLAQEGTYDGKRIRVEFALQGEALSRE
ALVRFIRAFETSPRFGIEFQGASLDEGRGLYTFSARVGVTGGESGAR
Nucleotide
Download Length: 624 bp
>NTDB_id=92961 MWM06_RS08850 WP_011228637.1 1603363..1603986(+) (pilN) [Thermus thermophilus strain SNM1-1]
TTGATTAGGCTGAACCTTCTCCCCAAAAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTCTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGTAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAAGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGTGACGGGGGGTGAAAGCGGTGCTCGCTAG
TTGATTAGGCTGAACCTTCTCCCCAAAAACCTCCGGCGCCGGGTGGAGCCGGGCTGGTGGCGCCTCCTCGCCCTCCTCTT
CGCCCTCGTGGTCCTCGGGGTCTTGGGGCTCGTCCACTACACCGCCTACACCGAGCTCTCCCTGGCCAAGGCGGAGCGGG
ACCAGCTCCAGGCGGAGGTGGAGGCCTTGAGGCCCTTCATCGCCGAGCTCGGCCGCCTGCAGGAGGAGCGTAAGGCCCTC
GAGGCCCTCCTCGCCATCCGGGAAGGCCTGGAGAAAAACGCCGTGCCCTGGTCCCAGTACCTGGCCGCCTTCATCAACCA
GATCCCCAGGGCGGGGGGGCGCCTCGAGGTGGCCCTCCGCTCGGTGAGCGCCCGCGCCCTCTCGGAAGAGGAGGCCGCCC
GCCTGGCCCAGGAAGGCACCTACGACGGCAAGCGGATCCGGGTGGAGTTCGCCCTCCAGGGGGAGGCCCTGAGCCGGGAG
GCCCTGGTCCGGTTCATCCGGGCCTTTGAGACCTCCCCCCGGTTCGGCATTGAGTTCCAGGGGGCCTCCCTGGACGAGGG
CCGGGGGCTTTACACCTTCAGCGCCCGCGTGGGCGTGACGGGGGGTGAAAGCGGTGCTCGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilN | Thermus thermophilus HB27 |
99.517 |
100 |
0.995 |