Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   V1498_RS19965 Genome accession   NZ_CP143542
Coordinates   3943184..3944314 (-) Length   376 a.a.
NCBI ID   WP_409295739.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-26     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3938184..3949314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1498_RS19935 (V1498_19935) flgL 3938559..3939440 (-) 882 WP_409295728.1 flagellar hook-associated protein FlgL -
  V1498_RS19940 (V1498_19940) flgK 3939453..3941054 (-) 1602 WP_409295730.1 flagellar hook-associated protein FlgK -
  V1498_RS19945 (V1498_19945) - 3941070..3941564 (-) 495 WP_409295731.1 flagellar protein FlgN -
  V1498_RS19950 (V1498_19950) flgM 3941623..3941886 (-) 264 WP_409295733.1 flagellar biosynthesis anti-sigma factor FlgM -
  V1498_RS19955 (V1498_19955) - 3942016..3942420 (-) 405 WP_409295735.1 TIGR03826 family flagellar region protein -
  V1498_RS19960 (V1498_19960) - 3942480..3943187 (-) 708 WP_409295737.1 ComF family protein -
  V1498_RS19965 (V1498_19965) comFA 3943184..3944314 (-) 1131 WP_409295739.1 DEAD/DEAH box helicase Machinery gene
  V1498_RS19970 (V1498_19970) - 3944378..3944629 (+) 252 WP_409295741.1 hypothetical protein -
  V1498_RS19975 (V1498_19975) - 3944704..3945546 (-) 843 WP_409295742.1 DegV family protein -
  V1498_RS19980 (V1498_19980) - 3945700..3946161 (+) 462 WP_409295744.1 hypothetical protein -
  V1498_RS19985 (V1498_19985) - 3946289..3946972 (-) 684 WP_409290532.1 response regulator -
  V1498_RS19990 (V1498_19990) - 3947059..3948222 (-) 1164 WP_409295745.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41608.48 Da        Isoelectric Point: 10.2943

>NTDB_id=929429 V1498_RS19965 WP_409295739.1 3943184..3944314(-) (comFA) [Peribacillus sp. SCS-26]
MMGRVSSCSKLYVWRGPEPAYPSLVDPLAWKGTLSPAQKEASLKAVAAIRTNSELLIWAVCGAGKTEILFEAIAAALAEG
KRICFAAPRTDVVLELAPRLRAAFPKAMTAALYGGSEERHTPGQLILTTTHQLYRFRQAFDVMIIDEVDAFPFSADLTLR
HAAERARKNPSSLIYLTATPSNSLKRQAASGGLPSAVIPARFHRHPIPVPDLQWSGNWEKSLAKKKIPIRVKTWLEERLQ
LSLPFLIFFPSIKKMEEALPLFQAHYPEIAAVHSEDPHRKEKVLALREGRVPGLLTTTILERGVTIPRLDVCVLGAEQPV
FTESALVQIAGRVGRKAEHPHGSITFFHFGRTEAMLTAVKHIKGMNREGEKRGLLN

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=929429 V1498_RS19965 WP_409295739.1 3943184..3944314(-) (comFA) [Peribacillus sp. SCS-26]
ATGATGGGGCGGGTCAGCTCCTGTTCAAAGCTGTATGTGTGGAGGGGTCCGGAACCGGCATACCCAAGCCTTGTAGATCC
GCTCGCCTGGAAGGGAACCCTTTCTCCTGCACAAAAGGAAGCGTCGCTGAAAGCAGTAGCTGCTATACGGACCAATAGTG
AACTCCTTATATGGGCCGTCTGTGGCGCCGGCAAAACAGAGATTCTGTTCGAGGCCATTGCCGCTGCCCTGGCAGAGGGA
AAGCGGATCTGCTTTGCCGCGCCGAGGACGGATGTGGTGCTGGAGCTCGCTCCGCGCCTGCGGGCTGCCTTTCCGAAAGC
GATGACCGCCGCCCTGTACGGCGGCAGCGAGGAGCGGCACACTCCGGGGCAGCTGATTCTCACCACCACCCACCAGCTCT
ACCGCTTCCGGCAGGCATTTGATGTGATGATCATTGACGAAGTGGATGCCTTCCCCTTTTCAGCCGATCTTACCCTGAGG
CATGCCGCTGAGAGAGCCAGAAAAAATCCCTCTTCTCTCATTTATTTAACCGCCACACCCTCAAACTCCCTGAAACGGCA
GGCTGCTTCAGGCGGACTCCCCTCCGCCGTCATCCCAGCCCGCTTCCACCGTCATCCGATTCCGGTCCCCGATCTCCAGT
GGTCAGGGAATTGGGAGAAGAGTTTGGCGAAAAAGAAAATCCCCATCCGGGTGAAGACCTGGCTTGAAGAACGCCTCCAG
CTTTCTCTCCCCTTTCTCATCTTCTTTCCCAGCATTAAAAAAATGGAAGAAGCGCTCCCGCTGTTTCAGGCACACTACCC
GGAAATTGCCGCCGTCCATTCAGAGGATCCCCACCGCAAGGAAAAGGTTCTCGCACTCCGGGAAGGGCGGGTGCCGGGAC
TCCTCACGACCACAATCCTTGAGCGGGGCGTGACCATTCCGCGACTTGATGTCTGTGTGCTCGGTGCCGAGCAGCCGGTT
TTCACTGAAAGCGCCCTGGTCCAGATTGCCGGCAGAGTCGGACGGAAGGCCGAGCATCCCCATGGCAGCATCACCTTTTT
CCACTTTGGCAGAACAGAAGCCATGCTTACGGCTGTAAAACACATTAAAGGAATGAACAGGGAAGGCGAAAAAAGGGGGC
TTCTGAATTGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(33-181)

Helicase conserved C-terminal domain (Helicase_C)

(245-336)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.951

97.606

0.527
  comFA/cflA Streptococcus mitis SK321

39.516

98.936

0.391
  comFA Lactococcus lactis subsp. cremoris KW2

39.189

98.404

0.386
  comFA/cflA Streptococcus pneumoniae R6

38.814

98.67

0.383
  comFA/cflA Streptococcus pneumoniae Rx1

38.814

98.67

0.383
  comFA/cflA Streptococcus pneumoniae D39

38.814

98.67

0.383
  comFA/cflA Streptococcus mitis NCTC 12261

38.814

98.67

0.383
  comFA/cflA Streptococcus pneumoniae TIGR4

38.544

98.67

0.38
  comFA Latilactobacillus sakei subsp. sakei 23K

39.595

92.021

0.364