Detailed information NTG0929185

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: ACA109_RS04525
• Genome accession: NZ_CP166872
• Coordinates: 856214..856816 (+)
• Length: 200 a.a.
• NCBI ID: WP_000271547.1
• Uniprot ID: Q2YT88
• Organism: Staphylococcus aureus strain 24EBSta0529
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 851214..861816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACA109_RS04485 (ACA109_04485)	-	851227..851346 (+)	120	WP_000840603.1	hypothetical protein	-
ACA109_RS04490 (ACA109_04490)	mreC	851545..852387 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
ACA109_RS04495 (ACA109_04495)	mreD	852387..852917 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
ACA109_RS04500 (ACA109_04500)	rplU	853153..853461 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
ACA109_RS04505 (ACA109_04505)	-	853467..853787 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
ACA109_RS04510 (ACA109_04510)	rpmA	853799..854083 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
ACA109_RS04515 (ACA109_04515)	obgE	854440..855732 (+)	1293	WP_000496098.1	GTPase ObgE	-
ACA109_RS04520 (ACA109_04520)	-	855745..856200 (+)	456	WP_000368902.1	ACT domain-containing protein	-
ACA109_RS04525 (ACA109_04525)	ruvA	856214..856816 (+)	603	WP_000271547.1	Holliday junction branch migration protein RuvA	Machinery gene
ACA109_RS04530 (ACA109_04530)	ruvB	856848..857852 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ACA109_RS04535 (ACA109_04535)	queA	857854..858879 (+)	1026	WP_001019166.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
ACA109_RS04540 (ACA109_04540)	tgt	858902..860041 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
ACA109_RS04545 (ACA109_04545)	yajC	860060..860320 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22262.46 Da
• Isoelectric Point: 6.0240

>NTDB_id=929185 ACA109_RS04525 WP_000271547.1 856214..856816(+) (ruvA) [Staphylococcus aureus strain 24EBSta0529]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=929185 ACA109_RS04525 WP_000271547.1 856214..856816(+) (ruvA) [Staphylococcus aureus strain 24EBSta0529]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA, C-terminal domain (RuvA_C) (156-197)

• RuvA N terminal domain (RuvA_N) (1-61)

3D structure

• AlphaFold DB: Q2YT88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425