Detailed information NTG0929150

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: V0M98_RS06715
• Genome accession: NZ_CP143487
• Coordinates: 1463687..1465909 (+)
• Length: 740 a.a.
• NCBI ID: WP_338922105.1
• Uniprot ID: -
• Organism: Pseudomonas silesiensis strain G3
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1458687..1470909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V0M98_RS06690 (V0M98_06690)	-	1459694..1460353 (+)	660	WP_338922101.1	transglutaminase family protein	-
V0M98_RS06695 (V0M98_06695)	-	1460397..1461020 (+)	624	WP_338922102.1	glutathione S-transferase	-
V0M98_RS06700 (V0M98_06700)	-	1461154..1462086 (+)	933	WP_064676328.1	ABC transporter ATP-binding protein	-
V0M98_RS06705 (V0M98_06705)	-	1462083..1462862 (+)	780	WP_338922103.1	ABC transporter permease	-
V0M98_RS06710 (V0M98_06710)	-	1463032..1463550 (-)	519	WP_338922104.1	DUF2062 domain-containing protein	-
V0M98_RS06715 (V0M98_06715)	comA	1463687..1465909 (+)	2223	WP_338922105.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
V0M98_RS06720 (V0M98_06720)	exbB	1466007..1466645 (+)	639	WP_064676332.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
V0M98_RS06725 (V0M98_06725)	-	1466642..1467073 (+)	432	WP_338922106.1	biopolymer transporter ExbD	-
V0M98_RS06730 (V0M98_06730)	lpxK	1467073..1468083 (+)	1011	WP_338922107.1	tetraacyldisaccharide 4'-kinase	-
V0M98_RS06735 (V0M98_06735)	-	1468109..1468294 (+)	186	WP_007945752.1	Trm112 family protein	-
V0M98_RS06740 (V0M98_06740)	kdsB	1468291..1469055 (+)	765	WP_150799809.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
V0M98_RS06745 (V0M98_06745)	-	1469055..1469519 (+)	465	WP_338922108.1	low molecular weight protein-tyrosine-phosphatase	-
V0M98_RS06750 (V0M98_06750)	murB	1469516..1470535 (+)	1020	WP_338922109.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 740 a.a.
• Molecular weight: 81069.30 Da
• Isoelectric Point: 10.5475

>NTDB_id=929150 V0M98_RS06715 WP_338922105.1 1463687..1465909(+) (comA) [Pseudomonas silesiensis strain G3]
MRTGMIALALGLLALRFLPVLPPVWFWLLLPVAALMMLPFRTYPLAFFLFGFSWACANAQWALDDRLPGNLDGETRWVEG
RVVGLPQNGEAVVRFQLADARSRRETVPSLLRLAWYGGPPVNSGEQWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGVRLQEARWAWRDGIRQRLQAVDAQGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPGRLPWLPWACGMAFAAALGYGLLAGFDVPVRRACVMIGLVLLWRLRFRHLGAWWPMLLALNAVLLLDPL
ASLQQGFWLSFAAVAVLIFIFGGRLGPWRWWQSWTRAQWLIAIGLGPLLLVLGLPISLSGPLVNLLAVPWISLVVLPPAL
LGTLLLPIPFVGEGLLWVAGGLIDLLFRGLALMAGRFPAWMPEAVPLWIGGLGALGALLLLMPRGVPLRPLGWPLLLLLV
FPPRQLLPEGTAEIWQLDVGQGLAILVRTRHHTLLYDAGPRFGDNDLGERVVLPTLRKLGVSGLDLMLISHAHADHAGGA
QAVAKGLPVRRVLSGEPLELPTELQAEACESGRQWTWDGVRFALWQWAAARESNPKSCVLQIEANGERLLLTGDIDTAAE
RALLDSPLAVTTDWLQSPHHGSRSSSSPALLAALQPAAALISRGQGNAFGHPHPTVLARYRQRGMAIHDSAEQGAIRLQL
GQFKPAWTMRQERRFWRPAP

Nucleotide

• Length: 2223 bp

>NTDB_id=929150 V0M98_RS06715 WP_338922105.1 1463687..1465909(+) (comA) [Pseudomonas silesiensis strain G3]
ATGCGCACAGGGATGATAGCGTTGGCGCTGGGTTTGCTGGCCCTGCGTTTTTTACCGGTACTACCGCCGGTCTGGTTTTG
GCTGTTGTTGCCGGTAGCGGCTTTGATGATGCTGCCGTTCAGGACGTATCCATTGGCATTTTTCCTGTTCGGCTTCAGTT
GGGCATGTGCGAATGCGCAGTGGGCCTTGGATGATCGCCTGCCCGGCAATCTGGATGGCGAAACCCGTTGGGTGGAAGGG
CGGGTGGTGGGATTGCCCCAGAATGGTGAGGCGGTCGTGCGTTTCCAATTGGCAGACGCTCGCTCGCGACGCGAAACCGT
CCCGTCATTGTTGCGCCTGGCCTGGTACGGCGGGCCGCCGGTCAACAGCGGCGAACAGTGGCGACTGGCGGTGAAATTGA
AGCGTCCTGCGGGGCTGCTCAATCCACATGCCTTCGATTACGACGCCTGGCTGCTGGCGCAACGCATCGGCGCCACCGGG
ACGGTCAAGGATGGCGTGCGTCTCCAGGAAGCCCGATGGGCCTGGCGCGACGGTATCCGCCAACGCTTGCAGGCGGTGGA
TGCCCAAGGCCGAACGGGAGCGCTGACGGCGCTGGTGCTGGGGGATGGCGCCGGGCTCAGTCGCGAGGACTGGCAGGTGT
TGCAAGACACCGGCACTGTGCATTTGCTGGTGATTTCCGGGCAGCACATTGGCTTGCTCGCGGGGCTGGTGTACCTGCTG
ATAGCCGGCCTGGCTCGTTATGGCCTGTGGCCGGGTCGTCTGCCCTGGCTGCCATGGGCCTGCGGCATGGCCTTCGCCGC
TGCGCTCGGTTATGGGTTGCTGGCCGGTTTCGACGTGCCCGTGCGGCGAGCCTGCGTGATGATCGGCCTGGTGCTGTTGT
GGCGGCTGCGCTTTCGTCACCTCGGTGCCTGGTGGCCGATGTTGCTGGCGCTCAACGCCGTTCTGCTGCTGGACCCGCTG
GCGAGTCTGCAGCAGGGTTTCTGGTTGTCTTTCGCCGCGGTAGCCGTGTTGATCTTCATTTTCGGCGGCCGCCTGGGTCC
CTGGCGCTGGTGGCAATCCTGGACTCGCGCCCAGTGGCTGATCGCGATCGGCCTGGGCCCGTTGTTGCTGGTGCTGGGCT
TGCCGATCAGCCTCAGCGGGCCGCTGGTCAATCTGCTGGCCGTGCCCTGGATCAGTCTGGTGGTGCTGCCGCCAGCCTTG
CTGGGGACGCTGCTGTTGCCCATCCCTTTTGTGGGCGAGGGGTTGCTGTGGGTGGCGGGAGGCTTGATCGATCTGTTGTT
CAGGGGCCTTGCACTGATGGCCGGGCGTTTCCCCGCGTGGATGCCGGAGGCGGTACCGTTGTGGATAGGGGGCCTGGGGG
CACTGGGTGCGTTGCTGTTGTTAATGCCTCGCGGAGTGCCCCTGCGCCCGTTGGGTTGGCCGCTGCTGCTGTTGCTGGTA
TTTCCACCCCGCCAACTGTTGCCGGAGGGCACGGCCGAAATCTGGCAACTGGACGTCGGCCAGGGGCTGGCCATCCTGGT
GCGTACCCGTCATCACACGCTGTTGTACGACGCCGGGCCACGTTTCGGCGATAACGACCTCGGCGAGCGCGTGGTACTGC
CGACGCTGCGCAAACTGGGGGTAAGCGGCCTCGACCTGATGCTGATCAGCCACGCCCATGCCGATCACGCCGGCGGGGCG
CAGGCCGTCGCCAAAGGGTTGCCGGTGAGGCGCGTGCTCAGTGGCGAACCCTTGGAGTTGCCCACCGAGCTGCAAGCCGA
GGCCTGCGAGAGCGGCCGGCAATGGACCTGGGACGGTGTGCGGTTCGCGCTCTGGCAATGGGCAGCAGCTCGGGAAAGCA
ATCCAAAATCCTGCGTGTTGCAGATCGAAGCCAACGGCGAGCGGCTGCTGCTGACCGGTGACATCGACACCGCGGCCGAG
CGGGCCCTGCTCGACAGTCCCCTGGCGGTGACCACCGATTGGTTGCAGTCGCCACACCATGGCAGTCGCAGTTCATCTTC
GCCGGCGCTGCTTGCCGCGTTGCAACCCGCGGCGGCGCTGATCTCCCGCGGCCAGGGCAATGCTTTCGGCCATCCCCATC
CCACGGTCTTGGCGCGTTACCGACAGCGTGGCATGGCGATACATGACAGCGCCGAACAGGGTGCCATCCGTCTGCAACTG
GGACAGTTCAAGCCGGCCTGGACAATGCGTCAGGAACGGCGTTTCTGGCGGCCTGCACCCTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-165)

• Competence protein (Competence) (198-464)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-681)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	62.953	97.027	0.611
comA	Ralstonia pseudosolanacearum GMI1000	33.373	100	0.38