Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V0M98_RS06720 Genome accession   NZ_CP143487
Coordinates   1466007..1466645 (+) Length   212 a.a.
NCBI ID   WP_064676332.1    Uniprot ID   A0A191YPS0
Organism   Pseudomonas silesiensis strain G3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1461007..1471645
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V0M98_RS06700 (V0M98_06700) - 1461154..1462086 (+) 933 WP_064676328.1 ABC transporter ATP-binding protein -
  V0M98_RS06705 (V0M98_06705) - 1462083..1462862 (+) 780 WP_338922103.1 ABC transporter permease -
  V0M98_RS06710 (V0M98_06710) - 1463032..1463550 (-) 519 WP_338922104.1 DUF2062 domain-containing protein -
  V0M98_RS06715 (V0M98_06715) comA 1463687..1465909 (+) 2223 WP_338922105.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V0M98_RS06720 (V0M98_06720) exbB 1466007..1466645 (+) 639 WP_064676332.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V0M98_RS06725 (V0M98_06725) - 1466642..1467073 (+) 432 WP_338922106.1 biopolymer transporter ExbD -
  V0M98_RS06730 (V0M98_06730) lpxK 1467073..1468083 (+) 1011 WP_338922107.1 tetraacyldisaccharide 4'-kinase -
  V0M98_RS06735 (V0M98_06735) - 1468109..1468294 (+) 186 WP_007945752.1 Trm112 family protein -
  V0M98_RS06740 (V0M98_06740) kdsB 1468291..1469055 (+) 765 WP_150799809.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V0M98_RS06745 (V0M98_06745) - 1469055..1469519 (+) 465 WP_338922108.1 low molecular weight protein-tyrosine-phosphatase -
  V0M98_RS06750 (V0M98_06750) murB 1469516..1470535 (+) 1020 WP_338922109.1 UDP-N-acetylmuramate dehydrogenase -
  V0M98_RS06755 (V0M98_06755) - 1470784..1471254 (+) 471 WP_154995935.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23027.26 Da        Isoelectric Point: 7.3616

>NTDB_id=929151 V0M98_RS06720 WP_064676332.1 1466007..1466645(+) (exbB) [Pseudomonas silesiensis strain G3]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFMGSGMGTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=929151 V0M98_RS06720 WP_064676332.1 1466007..1466645(+) (exbB) [Pseudomonas silesiensis strain G3]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCAATCGTTGC
CGAGCGTCTCTGGACCCTGCGTGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAAGACA
AGCAACTCAATAAAGAGAAGCTCAAGGAACTGCGCGCCAACTCGCCGTTGGGTGAAATCCTGGCGGCAGGCCTGGCCAAC
TCCAAACATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCACGGGTCATTCATGAACTCGAACGCTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCCCCGTTGCTGGGTTTGCTCGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTCATGGGCTCGGGCATGGGCACCAACGCTGCCGTGCTGGCCGGCGGTATTTCCAAAGCGCTGATCACCACCGCC
GCGGGCCTGATGGTCGGCATTCCGGCCGTGTTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTCGAGGTTGTGCAGGGTGATCGTGACGTGGACCTGTCCGAGGGCAAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A191YPS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

86.19

99.057

0.854