Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AB3239_RS08765 Genome accession   NZ_CP166831
Coordinates   1667937..1669985 (+) Length   682 a.a.
NCBI ID   WP_032725686.1    Uniprot ID   -
Organism   Bacillus subtilis strain TE3T-UV25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1662937..1674985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB3239_RS08735 (AB3239_08735) spoVM 1663573..1663653 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  AB3239_RS08740 (AB3239_08740) rpmB 1663726..1663914 (-) 189 WP_003221548.1 50S ribosomal protein L28 -
  AB3239_RS08745 (AB3239_08745) yloU 1664191..1664553 (+) 363 WP_003232054.1 Asp23/Gls24 family envelope stress response protein -
  AB3239_RS08750 (AB3239_08750) fakA 1664569..1666230 (+) 1662 WP_169037507.1 DAK2 domain-containing protein -
  AB3239_RS08755 (AB3239_08755) sdaAB 1666369..1667031 (+) 663 WP_370957395.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  AB3239_RS08760 (AB3239_08760) sdaAA 1667057..1667959 (+) 903 WP_032725684.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  AB3239_RS08765 (AB3239_08765) recG 1667937..1669985 (+) 2049 WP_032725686.1 ATP-dependent DNA helicase RecG Machinery gene
  AB3239_RS08770 (AB3239_08770) fapR 1670094..1670660 (+) 567 WP_003232044.1 transcription factor FapR -
  AB3239_RS08775 (AB3239_08775) plsX 1670674..1671675 (+) 1002 WP_038828221.1 phosphate acyltransferase PlsX -
  AB3239_RS08780 (AB3239_08780) fabD 1671694..1672647 (+) 954 WP_014479769.1 ACP S-malonyltransferase -
  AB3239_RS08785 (AB3239_08785) fabG 1672640..1673380 (+) 741 WP_153529742.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  AB3239_RS08790 (AB3239_08790) acpP 1673464..1673697 (+) 234 WP_003154310.1 acyl carrier protein -
  AB3239_RS08795 (AB3239_08795) rncS 1673837..1674586 (+) 750 WP_003232030.1 ribonuclease III -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 78125.62 Da        Isoelectric Point: 6.9755

>NTDB_id=929078 AB3239_RS08765 WP_032725686.1 1667937..1669985(+) (recG) [Bacillus subtilis strain TE3T-UV25]
MIQHQQTSIANIKGIGPETEKTLNELGIYDISDLLNYFPYRYDDYELRDLEEVKHDERVTVEGKVHSEPSLTYYGKKRNR
LTFRLLVGHYLITAVCFNRPYLKKQLSLGSVVTVSGKWDKHRQTISVQELKNGPHQEDQSIEPVYSVKENVTVKMMRRFI
QQALTQYADSLPDPLPEKLRKSYKLPDYYQALKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQGIRQR
FSNEELMRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFEKWDVSVALLTSSVKGKRRKELLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLDRILAFVEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDEKDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGEHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVASDAFWKEPEYAVLRDELLKSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=929078 AB3239_RS08765 WP_032725686.1 1667937..1669985(+) (recG) [Bacillus subtilis strain TE3T-UV25]
GTGATACAACATCAGCAAACTAGTATAGCTAACATTAAGGGTATTGGGCCGGAAACAGAAAAAACATTGAATGAACTCGG
TATTTATGACATTTCTGATCTTCTGAATTATTTCCCTTATCGTTATGATGACTACGAGCTGAGGGATTTAGAAGAAGTAA
AGCATGATGAAAGAGTCACAGTCGAAGGGAAGGTTCATTCAGAGCCTTCTCTTACCTATTACGGAAAAAAACGAAACAGG
CTGACATTCAGGCTTCTGGTCGGCCACTATTTAATTACAGCCGTATGTTTTAACCGGCCTTATTTGAAGAAGCAGCTTTC
GCTCGGCTCTGTGGTGACGGTCTCAGGTAAATGGGACAAGCACCGCCAAACCATCTCTGTTCAGGAGTTGAAAAACGGGC
CGCATCAAGAAGATCAAAGCATTGAACCAGTGTATTCTGTGAAAGAAAATGTTACCGTCAAAATGATGAGGCGCTTTATT
CAGCAGGCGCTGACCCAATATGCAGACTCACTTCCTGATCCTCTTCCGGAAAAGCTAAGAAAAAGCTATAAACTGCCTGA
CTATTATCAAGCGTTAAAAGCAATGCACCAGCCTGAAACAAGAGAAGCATTAAAGCTTGCCAGACGGCGGTTTGTTTATG
AAGAATTTTTGTTGTTTCAGTTGAAAATGCAGGCGTTCCGAAAGGCGGAAAGAGAGCAGACACAAGGGATACGGCAGCGT
TTTTCAAACGAAGAACTCATGAGATTTATCAAAAGCCTCCCGTTTCCCCTCACAAACGCCCAGTCACGCGTTCTTCGCGA
AATAACAGCAGACATGTCTTCTCCATACAGAATGAACCGTCTTCTTCAAGGGGACGTTGGATCAGGAAAAACAGCAGTCG
CCGCCATTGCACTGTATGCCGCGATCCTATCCGGATACCAAGGAGCGCTCATGGTGCCGACAGAAATTCTGGCCGAGCAG
CATGCTGATTCGCTCGTTTCGCTATTTGAAAAATGGGACGTCAGCGTTGCTCTTTTGACAAGCTCTGTTAAAGGGAAACG
GCGAAAAGAACTGCTTGAGCGTCTTGCGGCGGGTGAGATTGATATTCTTGTAGGAACCCACGCTTTAATCCAAGACGAGG
TGGAGTTTAAGGCGCTGAGTCTCGTTATTACAGATGAACAGCACAGATTTGGAGTTGAGCAGCGCAAAAAGCTTCGGAAC
AAAGGGCAGGATCCCGATGTTCTCTTTATGACAGCCACTCCAATCCCAAGAACATTAGCGATCACAGTGTTCGGTGAAAT
GGATGTATCTGTCATTGATGAGATGCCGGCTGGACGAAAGCGAATTGAAACCTATTGGGTAAAACATGACATGCTGGATC
GTATTTTGGCATTTGTCGAAAAAGAATTAAAGCAAGGCAGGCAGGCTTATATCATCTGTCCGCTGATTGAAGAATCAGAC
AAGCTTGATGTGCAAAACGCCATTGACGTGTACAATATGCTTTCTGATATTTTTCGGGGAAAATGGAATGTCGGCCTTAT
GCATGGAAAGCTGCATTCCGATGAAAAAGACCAGGTCATGAGAGAATTCAGCGCAAATCACTGTCAAATTCTCGTATCAA
CCACTGTTGTGGAGGTTGGCGTGAATGTTCCGAATGCAACGATTATGGTGATTTATGACGCCGACCGTTTCGGACTATCA
CAGCTTCACCAGCTGCGCGGCCGTGTTGGACGGGGTGAGCATCAATCTTTCTGTATTCTGATGGCTGATCCAAAATCAGA
AACAGGGAAAGAACGGATGAGGATCATGTCGGAGACCAATGACGGTTTCGAGCTGTCTGAAAAGGATCTGGAACTGAGAG
GTCCCGGTGATTTCTTCGGAAAAAAACAAAGCGGAATGCCGGAATTTAAAGTGGCGGACATGGTTCATGATTACAGAGCG
CTTGAAACGGCAAGGCAGGATGCTGCGAATCTTGTGGCTTCTGACGCGTTCTGGAAGGAGCCGGAATACGCTGTGTTAAG
AGATGAATTGCTGAAGAGCGGAGTAATGGACGGGGAAAAATTAAGCTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(260-415)

Helicase conserved C-terminal domain (Helicase_C)

(452-572)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(599-670)

RecG wedge domain (RecG_wedge)

(9-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

99.56

100

0.996
  recG/mmsA Streptococcus pneumoniae R6

49.175

97.801

0.481
  recG/mmsA Streptococcus pneumoniae R36A

49.175

97.801

0.481
  recG Neisseria meningitidis strain C311

39.695

96.041

0.381