Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VR487_RS18765 Genome accession   NZ_CP143431
Coordinates   4277746..4278456 (-) Length   236 a.a.
NCBI ID   WP_011790777.1    Uniprot ID   A0AAP2ZPA5
Organism   Shewanella oncorhynchi strain B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4272746..4283456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VR487_RS18750 (VR487_18750) - 4273544..4275553 (+) 2010 WP_330147554.1 fumarate reductase flavoprotein subunit -
  VR487_RS18755 (VR487_18755) - 4275550..4276275 (+) 726 WP_105251338.1 fumarate reductase iron-sulfur subunit -
  VR487_RS18760 (VR487_18760) - 4276504..4277571 (+) 1068 WP_105251337.1 porin -
  VR487_RS18765 (VR487_18765) ssb 4277746..4278456 (-) 711 WP_011790777.1 single-stranded DNA-binding protein Machinery gene
  VR487_RS18770 (VR487_18770) - 4278565..4279932 (-) 1368 WP_168825599.1 MFS transporter -
  VR487_RS18775 (VR487_18775) uvrA 4280336..4283218 (+) 2883 WP_131524377.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 25369.94 Da        Isoelectric Point: 5.2341

>NTDB_id=929047 VR487_RS18765 WP_011790777.1 4277746..4278456(-) (ssb) [Shewanella oncorhynchi strain B]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYSTEVVIDQSGSMQMLGSRGQGGQAQGAPMGGGMPQNAGYQSAPQQAAPAQNQYAPAPQAAPAY
QAPAQQQYAPPAPAQQQGYGQPQAQQPQQGGYAPKPQAAPAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 711 bp        

>NTDB_id=929047 VR487_RS18765 WP_011790777.1 4277746..4278456(-) (ssb) [Shewanella oncorhynchi strain B]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTATATGCCAAACGG
TAATGCAGTCGCAAACATCACAGTAGCGACTAGCGAATCGTGGAAAGACCAACAGGGTCAACAGCAAGAGCGTACTGAAT
GGCACCGTGTGGTTCTGTTCGGCAAATTAGCTGAAATTACCGGTGAATACCTGCGTAAAGGTTCACAGGTTTACCTTGAA
GGTAAACTGCAAACTCGTAAGTGGAAAGACCAAAGTGGTCAAGACCGTTACAGCACTGAAGTGGTTATCGACCAAAGCGG
TAGCATGCAAATGCTAGGTAGCCGTGGTCAAGGTGGACAAGCACAAGGCGCGCCAATGGGCGGCGGCATGCCACAAAACG
CAGGTTATCAATCTGCACCACAACAAGCCGCGCCTGCGCAAAATCAATATGCGCCAGCGCCTCAAGCTGCACCTGCTTAC
CAAGCGCCAGCTCAGCAACAATATGCTCCGCCAGCACCTGCCCAGCAGCAAGGTTATGGTCAGCCACAGGCTCAACAACC
ACAACAAGGTGGTTATGCGCCTAAGCCACAAGCCGCTCCAGCGCCAGCTTATCAAGCGCCTGCAGCACCGGCACAGCGTC
CAGCGCCACAACCACAGCAAAACTTCACTCCAGATTTGGATGATGGCTGGGATGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

65.143

74.153

0.483
  ssb Glaesserella parasuis strain SC1401

45.726

99.153

0.453
  ssb Neisseria meningitidis MC58

39.485

98.729

0.39