Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ACA343_RS09695 Genome accession   NZ_CP166821
Coordinates   2053748..2054077 (+) Length   109 a.a.
NCBI ID   WP_019485985.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain J5083553     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2048748..2059077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACA343_RS09680 (ACA343_09680) - 2049480..2050421 (+) 942 WP_306430721.1 NAD-dependent epimerase/dehydratase family protein -
  ACA343_RS09685 (ACA343_09685) - 2050522..2051547 (+) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  ACA343_RS09690 (ACA343_09690) - 2051560..2053557 (+) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  ACA343_RS09695 (ACA343_09695) comEA/comE1 2053748..2054077 (+) 330 WP_019485985.1 ComEA family DNA-binding protein Machinery gene
  ACA343_RS09705 (ACA343_09705) - 2054294..2055490 (-) 1197 WP_019485986.1 amino acid aminotransferase -
  ACA343_RS09710 (ACA343_09710) uvrB 2055678..2057690 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11325.23 Da        Isoelectric Point: 8.0459

>NTDB_id=928834 ACA343_RS09695 WP_019485985.1 2053748..2054077(+) (comEA/comE1) [Pseudomonas aeruginosa strain J5083553]
MHLIKSALLLILFACLPFSASAAPVAVAKNPAAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=928834 ACA343_RS09695 WP_019485985.1 2053748..2054077(+) (comEA/comE1) [Pseudomonas aeruginosa strain J5083553]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGGCGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385
  comEA Vibrio cholerae C6706

38.182

100

0.385
  comEA Vibrio cholerae strain A1552

38.182

100

0.385