Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   V1236_RS12155 Genome accession   NZ_CP143344
Coordinates   2527205..2527870 (+) Length   221 a.a.
NCBI ID   WP_000203219.1    Uniprot ID   A0A219CAS9
Organism   Acinetobacter baumannii strain 2023CK-01487     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2522205..2532870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1236_RS12135 (V1236_12135) - 2523459..2524838 (-) 1380 WP_000470938.1 L-serine ammonia-lyase -
  V1236_RS12145 (V1236_12145) - 2526344..2526766 (-) 423 WP_001195082.1 OsmC family protein -
  V1236_RS12150 (V1236_12150) - 2526845..2526964 (-) 120 Protein_2378 hypothetical protein -
  V1236_RS12155 (V1236_12155) crp 2527205..2527870 (+) 666 WP_000203219.1 cAMP-activated global transcriptional regulator CRP Regulator
  V1236_RS12160 (V1236_12160) - 2527927..2529017 (+) 1091 WP_085940413.1 IS4-like element ISAba1 family transposase -
  V1236_RS12165 (V1236_12165) tssC 2529130..2530611 (-) 1482 WP_001066523.1 type VI secretion system contractile sheath large subunit -
  V1236_RS12170 (V1236_12170) tssB 2530604..2531107 (-) 504 WP_001119042.1 type VI secretion system contractile sheath small subunit -
  V1236_RS12175 (V1236_12175) - 2531124..2531816 (-) 693 WP_000869709.1 hypothetical protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24956.78 Da        Isoelectric Point: 8.1128

>NTDB_id=928723 V1236_RS12155 WP_000203219.1 2527205..2527870(+) (crp) [Acinetobacter baumannii strain 2023CK-01487]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFLCTR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=928723 V1236_RS12155 WP_000203219.1 2527205..2527870(+) (crp) [Acinetobacter baumannii strain 2023CK-01487]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGCCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTCTCTGTACACGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, crp family (Crp)

(176-207)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

100

98.19

0.982
  crp Vibrio cholerae strain A1552

47.317

92.76

0.439
  crp Haemophilus influenzae Rd KW20

48.705

87.33

0.425