Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   SA496_RS02290 Genome accession   NZ_CP143312
Coordinates   462375..463712 (-) Length   445 a.a.
NCBI ID   WP_330114994.1    Uniprot ID   -
Organism   Pseudomonas sp. JS3066     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 457375..468712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA496_RS02255 (SA496_02255) - 457664..457975 (-) 312 WP_330114987.1 hypothetical protein -
  SA496_RS02260 (SA496_02260) - 457987..458484 (-) 498 WP_330114988.1 PilX N-terminal domain-containing pilus assembly protein -
  SA496_RS02265 (SA496_02265) - 458494..459303 (-) 810 WP_330114989.1 PilW family protein -
  SA496_RS02270 (SA496_02270) pilV 459308..459910 (-) 603 WP_330114990.1 type IV pilus modification protein PilV -
  SA496_RS02275 (SA496_02275) - 459917..460534 (-) 618 WP_330114991.1 GspH/FimT family protein -
  SA496_RS02280 (SA496_02280) - 460528..461040 (-) 513 WP_330114992.1 GspH/FimT family pseudopilin -
  SA496_RS02285 (SA496_02285) thiO 461155..462249 (+) 1095 WP_330114993.1 glycine oxidase ThiO -
  SA496_RS02290 (SA496_02290) pilR 462375..463712 (-) 1338 WP_330114994.1 sigma-54 dependent transcriptional regulator Regulator
  SA496_RS02295 (SA496_02295) pilS 463715..465316 (-) 1602 WP_330114995.1 ATP-binding protein Regulator
  SA496_RS02300 (SA496_02300) - 465306..465542 (-) 237 WP_153921621.1 PP0621 family protein -
  SA496_RS02305 (SA496_02305) - 465715..467346 (+) 1632 WP_330114996.1 NAD+ synthase -
  SA496_RS02310 (SA496_02310) - 467408..468427 (-) 1020 WP_330114997.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49643.01 Da        Isoelectric Point: 5.4558

>NTDB_id=928633 SA496_RS02290 WP_330114994.1 462375..463712(-) (pilR) [Pseudomonas sp. JS3066]
MTRQRALIVDDEPDIRELLEITLGRMKLDTRSARNLKEARDWLAREPFDLCLTDMRLPDGTGLELVQYIQQRHPMVPVAM
ITAYGSLDTAVNALKAGAFDFVTKPVDLGRLRELVNTALRLSTPDDCEAPVDGRLLGTSPPMNSLRKQIQKLARSQAPVY
ISGESGSGKELVARLIHEQGPRTERPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKQGLFQAANGGTLFLDEVADLP
LAMQVKLLRAIQEKAVRAVGGQQEVVVDVRILSATHKDLAAEVAAGRFRQDLYYRLNVIELSVPPLRERREDIPLLAESM
LKRLAQQSGLPAATLAPEALDKLKCYRFPGNVRELENMLERAYTLCEDDQIQARDLRLADATGPAEGGEASLAQIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=928633 SA496_RS02290 WP_330114994.1 462375..463712(-) (pilR) [Pseudomonas sp. JS3066]
ATGACCCGACAGAGAGCCCTGATCGTCGACGACGAGCCCGATATCCGCGAATTGCTGGAGATCACCCTCGGGCGGATGAA
GCTCGACACGCGTAGCGCCCGCAACCTCAAGGAAGCCCGCGATTGGCTGGCACGCGAACCTTTCGACCTGTGTCTCACCG
ACATGCGCCTGCCCGACGGCACCGGCCTGGAACTGGTGCAGTACATCCAGCAGCGCCACCCCATGGTTCCGGTGGCGATG
ATCACCGCCTACGGCAGCCTCGACACTGCGGTGAATGCCCTGAAGGCCGGCGCGTTCGATTTCGTCACCAAGCCGGTGGA
CCTCGGCCGCCTGCGCGAACTGGTCAACACCGCTCTGCGCCTGAGCACCCCGGATGACTGCGAAGCCCCCGTGGATGGCC
GCCTGCTGGGCACGTCGCCACCCATGAATTCCCTGCGCAAACAGATCCAGAAGCTCGCCCGCAGCCAGGCCCCCGTGTAC
ATCAGCGGCGAATCGGGTAGCGGCAAGGAGTTGGTCGCGCGACTGATCCACGAACAGGGTCCGCGTACCGAGCGTCCCTT
CGTGCCGGTCAACTGCGGCGCCATTCCATCCGAGCTGATGGAAAGCGAATTCTTCGGCCATAAGAAGGGCAGCTTCACCG
GTGCGGTGGAAGACAAGCAGGGCCTGTTCCAGGCAGCCAATGGTGGCACCCTGTTCCTAGACGAAGTAGCCGACCTGCCG
CTGGCCATGCAGGTCAAGCTTCTACGGGCCATCCAGGAAAAGGCCGTACGCGCCGTGGGGGGGCAGCAGGAAGTAGTCGT
GGACGTGCGCATCCTCAGCGCCACCCACAAGGACCTCGCCGCGGAAGTCGCCGCAGGCCGATTCCGCCAGGATCTCTACT
ACCGCCTCAATGTGATTGAACTCAGCGTGCCGCCACTGCGCGAGCGCCGGGAAGACATCCCGCTGCTGGCCGAAAGCATG
CTCAAGCGCCTGGCCCAGCAGAGTGGGCTGCCGGCCGCGACCCTGGCGCCGGAAGCCCTGGACAAGCTCAAGTGCTACCG
CTTCCCCGGCAACGTGCGCGAGCTGGAGAACATGCTCGAACGGGCCTACACGCTCTGCGAAGACGACCAGATCCAGGCCC
GCGACCTGCGCCTGGCCGACGCCACCGGCCCAGCCGAGGGGGGCGAGGCCAGCCTGGCACAGATCGACAACCTGGAAGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCACTCGAAGAAACCCGCTGGAACCGCACGGCGGCGGCGCAACG
CCTGGGCCTGACGTTCCGCTCCATGCGCTATCGTCTGAAGAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

87.865

100

0.879
  pilR Acinetobacter baumannii strain A118

50.109

100

0.517