Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   SA496_RS02295 Genome accession   NZ_CP143312
Coordinates   463715..465316 (-) Length   533 a.a.
NCBI ID   WP_330114995.1    Uniprot ID   -
Organism   Pseudomonas sp. JS3066     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 458715..470316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SA496_RS02270 (SA496_02270) pilV 459308..459910 (-) 603 WP_330114990.1 type IV pilus modification protein PilV -
  SA496_RS02275 (SA496_02275) - 459917..460534 (-) 618 WP_330114991.1 GspH/FimT family protein -
  SA496_RS02280 (SA496_02280) - 460528..461040 (-) 513 WP_330114992.1 GspH/FimT family pseudopilin -
  SA496_RS02285 (SA496_02285) thiO 461155..462249 (+) 1095 WP_330114993.1 glycine oxidase ThiO -
  SA496_RS02290 (SA496_02290) pilR 462375..463712 (-) 1338 WP_330114994.1 sigma-54 dependent transcriptional regulator Regulator
  SA496_RS02295 (SA496_02295) pilS 463715..465316 (-) 1602 WP_330114995.1 ATP-binding protein Regulator
  SA496_RS02300 (SA496_02300) - 465306..465542 (-) 237 WP_153921621.1 PP0621 family protein -
  SA496_RS02305 (SA496_02305) - 465715..467346 (+) 1632 WP_330114996.1 NAD+ synthase -
  SA496_RS02310 (SA496_02310) - 467408..468427 (-) 1020 WP_330114997.1 outer membrane protein assembly factor BamD -
  SA496_RS02315 (SA496_02315) rluD 468575..469549 (+) 975 WP_120652975.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  SA496_RS02320 (SA496_02320) pgeF 469546..470271 (+) 726 WP_330114998.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 533 a.a.        Molecular weight: 58886.09 Da        Isoelectric Point: 7.9485

>NTDB_id=928634 SA496_RS02295 WP_330114995.1 463715..465316(-) (pilS) [Pseudomonas sp. JS3066]
MSTDTLPAPAVLSAQGRRIFRLYSLYRLLIGLALVLLISSELDDNLLDLTRPELFRNASWFYLILNALIAALVPRPRSMV
QVFSLAVVDVLLLCCLFLAAGGTPSGIANLIVVSVAISNILLRGRIGLLVAAVATIGLIYLTFYLSISHPQAASQFVQAG
GFGALCFAAALFIQGLSRRLQLSETLAEQRAADVANLEALNAQILERMRTGILVLDPQNMILLANNGAQSFLGKESLAGR
PLDAECPVLLESLQQWLANPTLRPQSLQAFVNGPMLQPSFVNLQRGNQQNVLVFLEDISQITQQAQQLKLASLGRLTAGI
AHEIRNPLGAISHAAQLLQESEELQGPDRRLAHIIQDHSRRMNLVIENVLQLSRRRKSEPQLLDLKYWLTRFASEFRTSC
GPDQTLHLATLGSTLQTRMDPHQLTQVLTNLVQNGLRYSTQKNARGQVWLKLFRDPESDLPVLEVEDDGDGVPPGQVHNI
FEPFFTTESKGTGLGLYISRELCESNQARLDYKPREHGGSCFRITFAHPRKLS

Nucleotide


Download         Length: 1602 bp        

>NTDB_id=928634 SA496_RS02295 WP_330114995.1 463715..465316(-) (pilS) [Pseudomonas sp. JS3066]
GTGAGCACTGATACCCTCCCCGCCCCCGCCGTACTCAGCGCCCAGGGGCGGCGCATCTTCCGCCTGTACAGCCTGTATCG
ACTGCTGATCGGCCTTGCGCTGGTCCTCCTGATCTCCAGCGAGCTGGACGACAACCTCCTGGATCTGACGCGACCGGAGC
TGTTCCGCAATGCCAGCTGGTTCTACCTGATCCTCAATGCCTTGATCGCCGCTCTGGTGCCTCGGCCACGGAGCATGGTG
CAGGTCTTCAGCCTGGCAGTGGTGGACGTGTTGCTGCTGTGCTGCCTGTTCCTTGCGGCGGGCGGCACACCCAGCGGTAT
CGCCAACCTCATAGTGGTTTCGGTGGCCATCTCCAATATCCTCCTGCGCGGACGCATTGGCCTGCTGGTGGCGGCGGTGG
CGACGATAGGGCTGATCTACCTGACCTTCTATCTGAGCATCAGCCATCCGCAGGCCGCCAGCCAGTTCGTCCAGGCCGGT
GGCTTTGGCGCCCTGTGCTTCGCCGCGGCGCTGTTCATCCAGGGGCTGAGCCGACGCCTGCAACTCAGCGAAACCCTCGC
GGAGCAGCGCGCGGCGGACGTAGCCAACCTGGAGGCCCTGAACGCGCAGATTCTCGAGCGCATGCGCACTGGCATCCTGG
TGCTCGACCCGCAGAACATGATTCTTCTTGCCAACAATGGCGCGCAGTCTTTCCTGGGCAAGGAGTCGCTGGCCGGACGC
CCCCTGGACGCCGAGTGCCCGGTGTTGCTGGAAAGCCTGCAACAGTGGTTGGCCAACCCCACGTTACGCCCACAGAGCCT
CCAGGCGTTCGTCAACGGCCCAATGTTGCAACCCAGCTTCGTCAACCTGCAGCGCGGCAATCAGCAGAACGTTCTGGTCT
TCCTCGAAGACATCTCGCAAATCACCCAGCAGGCCCAGCAGCTGAAGCTTGCCTCCCTCGGCCGTCTGACCGCTGGCATT
GCCCACGAGATCCGCAATCCCCTGGGCGCCATCAGCCATGCAGCCCAGCTCCTGCAGGAGTCGGAAGAGCTCCAGGGACC
TGATCGGCGACTGGCTCACATCATCCAGGACCATTCGCGGCGCATGAACCTGGTGATCGAGAACGTGTTGCAGCTGTCCC
GCCGCCGCAAGTCCGAGCCACAGCTGCTGGACCTCAAGTACTGGCTGACCCGTTTCGCCAGCGAGTTCCGCACATCTTGC
GGCCCCGACCAGACCCTGCACCTGGCAACCCTCGGCAGCACCTTGCAGACCCGCATGGACCCGCACCAGCTAACCCAGGT
ACTGACCAACCTGGTCCAGAACGGCCTGCGCTACAGCACCCAGAAGAACGCCCGGGGCCAGGTCTGGCTCAAACTCTTCC
GCGACCCCGAAAGCGACCTGCCTGTACTGGAAGTAGAAGACGACGGGGACGGCGTCCCGCCCGGGCAGGTGCACAATATC
TTCGAGCCCTTCTTCACCACTGAAAGCAAGGGCACCGGACTCGGCCTGTACATCTCCCGTGAACTCTGCGAGAGCAACCA
GGCCCGCCTCGACTACAAACCGCGCGAACACGGTGGCAGCTGCTTCCGCATCACCTTCGCCCACCCGCGCAAACTGAGCT
GA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-375)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(420-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.474

97.373

0.647