Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   VSX76_RS06850 Genome accession   NZ_CP143311
Coordinates   1037780..1039132 (+) Length   450 a.a.
NCBI ID   WP_330111019.1    Uniprot ID   -
Organism   Methylophaga thalassica strain IOM01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1032780..1044132
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VSX76_RS06830 (VSX76_06825) suhB 1033222..1034022 (+) 801 WP_007145709.1 inositol-1-monophosphatase -
  VSX76_RS06835 (VSX76_06830) typA 1034071..1035900 (+) 1830 WP_007145708.1 translational GTPase TypA -
  VSX76_RS06840 (VSX76_06835) - 1035964..1036182 (+) 219 WP_007145707.1 PP0621 family protein -
  VSX76_RS06845 (VSX76_06840) - 1036179..1037783 (+) 1605 WP_330111018.1 sensor histidine kinase -
  VSX76_RS06850 (VSX76_06845) pilR 1037780..1039132 (+) 1353 WP_330111019.1 sigma-54 dependent transcriptional regulator Regulator
  VSX76_RS06855 (VSX76_06850) - 1039135..1040076 (-) 942 WP_330111020.1 hypothetical protein -
  VSX76_RS06860 (VSX76_06855) - 1040164..1040592 (+) 429 WP_330111021.1 protein YgfX -
  VSX76_RS06865 (VSX76_06860) nadB 1040552..1042171 (-) 1620 WP_007145702.1 L-aspartate oxidase -
  VSX76_RS06870 (VSX76_06865) rpoE 1042299..1042877 (+) 579 WP_007145701.1 RNA polymerase sigma factor RpoE -
  VSX76_RS06875 (VSX76_06870) - 1042874..1043434 (+) 561 WP_273182181.1 sigma-E factor negative regulatory protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49407.79 Da        Isoelectric Point: 5.2745

>NTDB_id=928613 VSX76_RS06850 WP_330111019.1 1037780..1039132(+) (pilR) [Methylophaga thalassica strain IOM01]
MNRQALVIDDEPDILELLTMTLSGMSIDCVTAESVAQANQALKQQSFDLCFTDMRLPDGNGLDIVRTIQKTYPNCPVAVI
TAHGNIDLAVEALKSGAFDFVSKPLKLKVLRDLVNSALNLSPSKSDVKERRSRDKLLGDTDVIRSLRNKISKLARSQAPV
YITGESGTGKELVARLIHELGSRSDEAFVPINCGAIPAELVESEFFGHKKGAFTGAVADKQGLFQAANGGTLFLDEVADL
PLMMQVKLLRAIQEKAIRPVGGNEEISVDVRILSATHKNLAECVKQGSFREDLFYRLNVIELSVPPLRQRKADIPLLVEH
ILVQLAAKSGELKPVIGEDAISALREYAFPGNVRELENILERAMTWSDGSVIHEADLMLPEAPLNSLSADEPGFSLTADK
VDLESQLEDQERQLIVDALESTRWNKTAAAKKLGISFRSLRYKLKKLALD

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=928613 VSX76_RS06850 WP_330111019.1 1037780..1039132(+) (pilR) [Methylophaga thalassica strain IOM01]
ATGAACAGACAAGCGTTAGTCATAGATGATGAACCCGATATCCTTGAACTGTTAACAATGACATTGTCAGGTATGTCGAT
TGATTGTGTGACGGCGGAGAGTGTTGCCCAAGCCAATCAGGCATTAAAACAACAATCTTTTGATCTTTGTTTTACTGATA
TGCGATTACCTGATGGTAACGGTTTGGATATTGTCCGCACTATTCAAAAAACTTATCCAAATTGTCCCGTGGCGGTTATC
ACTGCGCACGGTAATATTGATTTGGCTGTTGAAGCGCTTAAATCAGGCGCCTTCGATTTTGTATCAAAACCACTTAAGCT
TAAAGTCTTACGTGATTTAGTGAACTCAGCATTAAATTTATCTCCGTCAAAGTCAGATGTAAAAGAGCGCCGTTCTAGGG
ATAAATTACTCGGGGATACCGATGTTATTCGCTCTTTGAGAAATAAAATCAGTAAATTAGCTCGCAGTCAGGCACCTGTT
TATATCACGGGGGAGTCAGGTACAGGCAAAGAGCTTGTCGCACGTTTAATTCATGAGTTAGGCAGTCGTTCTGATGAGGC
TTTTGTGCCGATTAATTGCGGTGCTATCCCGGCAGAATTAGTGGAAAGTGAGTTTTTTGGACATAAAAAAGGCGCTTTTA
CGGGCGCTGTTGCTGATAAACAGGGTTTATTTCAGGCGGCTAACGGCGGTACGTTGTTTCTGGATGAAGTCGCTGATTTG
CCATTAATGATGCAGGTGAAGTTACTAAGAGCGATTCAGGAAAAAGCCATTAGACCTGTTGGTGGCAATGAAGAAATTAG
CGTTGACGTTCGAATATTGTCGGCAACCCATAAAAATCTGGCGGAATGTGTAAAACAAGGTAGTTTCCGTGAAGACTTGT
TTTACCGTTTGAACGTTATTGAACTTTCAGTGCCACCGCTCAGACAACGTAAAGCGGATATTCCTCTGTTAGTCGAGCAT
ATTCTTGTGCAGCTTGCGGCTAAAAGTGGTGAGCTAAAACCAGTGATTGGTGAGGATGCCATTAGTGCCTTACGTGAATA
TGCCTTCCCTGGCAATGTACGCGAACTTGAAAATATCCTGGAAAGAGCGATGACATGGTCTGATGGCTCGGTTATTCACG
AAGCAGATTTAATGTTGCCTGAAGCACCTCTAAATAGTCTATCAGCCGATGAGCCCGGCTTTAGTCTAACAGCAGATAAA
GTTGACCTAGAATCACAACTGGAAGATCAGGAGCGGCAGCTTATTGTTGATGCGCTGGAGTCAACGCGTTGGAATAAGAC
GGCCGCTGCAAAAAAGCTTGGCATTAGTTTCCGTTCTTTACGCTATAAACTAAAAAAACTGGCATTGGATTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(407-447)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(6-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

60.31

100

0.604
  pilR Acinetobacter baumannii strain A118

49.784

100

0.511
  luxO Vibrio cholerae strain A1552

37.753

98.889

0.373