Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   VT264_RS11965 Genome accession   NZ_CP143266
Coordinates   2503075..2503410 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain JBCS608     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2498075..2508410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT264_RS11945 (VT264_11945) gcvT 2498683..2499783 (-) 1101 WP_024085597.1 glycine cleavage system aminomethyltransferase GcvT -
  VT264_RS11950 (VT264_11950) - 2500209..2501879 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  VT264_RS11955 (VT264_11955) - 2501897..2502691 (+) 795 WP_003153106.1 YqhG family protein -
  VT264_RS11960 (VT264_11960) sinI 2502868..2503041 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  VT264_RS11965 (VT264_11965) sinR 2503075..2503410 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  VT264_RS11970 (VT264_11970) tasA 2503458..2504243 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  VT264_RS11975 (VT264_11975) sipW 2504307..2504891 (-) 585 WP_003153100.1 signal peptidase I SipW -
  VT264_RS11980 (VT264_11980) tapA 2504863..2505534 (-) 672 WP_024085598.1 amyloid fiber anchoring/assembly protein TapA -
  VT264_RS11985 (VT264_11985) - 2505794..2506123 (+) 330 WP_024085599.1 DUF3889 domain-containing protein -
  VT264_RS11990 (VT264_11990) - 2506163..2506342 (-) 180 WP_003153093.1 YqzE family protein -
  VT264_RS11995 (VT264_11995) comGG 2506399..2506776 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  VT264_RS12000 (VT264_12000) comGF 2506777..2507277 (-) 501 WP_223203779.1 competence type IV pilus minor pilin ComGF -
  VT264_RS12005 (VT264_12005) comGE 2507186..2507500 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  VT264_RS12010 (VT264_12010) comGD 2507484..2507921 (-) 438 WP_024085600.1 competence type IV pilus minor pilin ComGD Machinery gene
  VT264_RS12015 (VT264_12015) comGC 2507911..2508177 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=928416 VT264_RS11965 WP_003153104.1 2503075..2503410(+) (sinR) [Bacillus velezensis strain JBCS608]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=928416 VT264_RS11965 WP_003153104.1 2503075..2503410(+) (sinR) [Bacillus velezensis strain JBCS608]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991