Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   MWL88_RS08180 Genome accession   NZ_AP025575
Coordinates   1871534..1871632 (-) Length   32 a.a.
NCBI ID   WP_114549920.1    Uniprot ID   -
Organism   Eggerthella lenta strain CE91-St33     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1866534..1876632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWL88_RS08145 (CE91St33_16050) - 1867213..1868175 (-) 963 WP_021409058.1 glycine--tRNA ligase subunit alpha -
  MWL88_RS08150 (CE91St33_16060) lepB 1868222..1868788 (-) 567 WP_021409057.1 signal peptidase I -
  MWL88_RS08155 (CE91St33_16070) lepB 1868946..1869512 (-) 567 WP_021409056.1 signal peptidase I -
  MWL88_RS08160 (CE91St33_16080) trmD 1869509..1870231 (-) 723 WP_021409060.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  MWL88_RS08165 (CE91St33_16090) - 1870274..1870750 (-) 477 WP_226843968.1 16S rRNA processing protein RimM -
  MWL88_RS08170 (CE91St33_16100) - 1870796..1871050 (-) 255 WP_021410421.1 KH domain-containing protein -
  MWL88_RS08175 (CE91St33_16110) rpsP 1871056..1871301 (-) 246 WP_009304490.1 30S ribosomal protein S16 -
  MWL88_RS08180 scnR 1871534..1871632 (-) 99 WP_114549920.1 helix-turn-helix domain-containing protein Regulator
  MWL88_RS14890 (CE91St33_16120) - 1871688..1873121 (-) 1434 WP_195631221.1 helix-turn-helix transcriptional regulator -
  MWL88_RS08190 (CE91St33_16130) - 1873444..1875921 (+) 2478 WP_021410419.1 molybdopterin-dependent oxidoreductase -
  MWL88_RS08195 (CE91St33_16140) - 1875932..1876558 (+) 627 WP_114549917.1 DMSO/selenate family reductase complex B subunit -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3856.48 Da        Isoelectric Point: 10.4212

>NTDB_id=92837 MWL88_RS08180 WP_114549920.1 1871534..1871632(-) (scnR) [Eggerthella lenta strain CE91-St33]
MHIRRIREKIEENPSNPVYLQTVWRFGCRLGG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=92837 MWL88_RS08180 WP_114549920.1 1871534..1871632(-) (scnR) [Eggerthella lenta strain CE91-St33]
GTGCATATCAGAAGAATTCGCGAGAAGATAGAGGAGAACCCGTCGAACCCGGTGTACCTGCAAACCGTGTGGCGTTTCGG
CTGCCGCCTGGGAGGCTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(1-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

58.621

90.625

0.531
  vicR Streptococcus mutans UA159

60

62.5

0.375
  micA Streptococcus pneumoniae Cp1015

60

62.5

0.375

Multiple sequence alignment