Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   AB5J51_RS26555 Genome accession   NZ_CP165727
Coordinates   5799499..5800644 (+) Length   381 a.a.
NCBI ID   WP_369778801.1    Uniprot ID   -
Organism   Streptomyces sp. R33     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5794499..5805644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J51_RS26535 (AB5J51_26575) - 5794739..5795548 (+) 810 WP_369778798.1 glucose 1-dehydrogenase -
  AB5J51_RS26540 (AB5J51_26580) - 5795758..5797836 (+) 2079 WP_369778799.1 molybdopterin oxidoreductase family protein -
  AB5J51_RS26545 (AB5J51_26585) - 5797802..5798806 (-) 1005 WP_053785327.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  AB5J51_RS26550 (AB5J51_26590) - 5798803..5799405 (-) 603 WP_369778800.1 hypothetical protein -
  AB5J51_RS26555 (AB5J51_26595) rpoS 5799499..5800644 (+) 1146 WP_369778801.1 RNA polymerase sigma factor Regulator
  AB5J51_RS26560 (AB5J51_26600) rcrQ 5800706..5802628 (-) 1923 WP_053785325.1 ABC transporter ATP-binding protein Regulator
  AB5J51_RS26565 (AB5J51_26605) rcrP 5802625..5804358 (-) 1734 WP_053785324.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 42736.86 Da        Isoelectric Point: 4.7808

>NTDB_id=927673 AB5J51_RS26555 WP_369778801.1 5799499..5800644(+) (rpoS) [Streptomyces sp. R33]
MSYPTLRCGAPVLGALEVAPVQTQILTVNVSPPVQDTEAIAGEEPEVDAVDEEPEEPEALELIEQVPEQRRRADSGGAGP
SADLFRQYLREIGRIPLLSAAEEVELARRVEAGLFAEEKLGNTPDLDLRLALDLDKLVVMGRMAKRRLIESNLRLVVSVA
KRYVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRML
QERGYEPTAEEVAVHLELTPERVLEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPMESAAFFLLREHLEAVLSTL
GERERKVVQLRYGLADGRPRTLEEIGRIFGVTRERIRQIESKTLNKLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=927673 AB5J51_RS26555 WP_369778801.1 5799499..5800644(+) (rpoS) [Streptomyces sp. R33]
GTGTCGTACCCCACACTGAGGTGCGGTGCCCCCGTCCTCGGAGCCCTGGAGGTCGCCCCCGTGCAGACCCAGATCCTGAC
CGTCAACGTGAGCCCGCCCGTCCAAGACACCGAGGCCATTGCGGGTGAAGAGCCCGAGGTCGACGCCGTGGACGAGGAGC
CCGAAGAGCCCGAGGCGCTGGAGCTGATCGAGCAGGTGCCCGAGCAGCGCCGGCGCGCGGACAGCGGCGGAGCCGGCCCT
TCCGCCGACCTGTTCCGGCAGTACCTGCGCGAGATAGGCAGGATCCCGCTGCTTTCCGCCGCCGAGGAGGTCGAGCTCGC
GCGCCGCGTCGAAGCCGGACTCTTCGCCGAGGAGAAGCTGGGCAACACCCCCGACCTCGACCTGCGGCTCGCCCTCGACC
TCGACAAGCTCGTCGTCATGGGGCGGATGGCCAAGAGGCGCCTCATCGAGTCGAACCTGAGGCTCGTCGTCTCCGTCGCG
AAGCGCTACGTGGGCCGCGGGCTCACCATGCTCGACCTCGTGCAGGAGGGGAACCTCGGGCTCATCCGGGCCGTTGAGAA
GTTCGACTACGCCCGGGGGTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGGCAGGCCATGTCGCGGGCCCTCGCCG
ACCAGGCCCGCACCATCCGCGTACCCGTGCACGTCGTGGAGCTGATCAACCGCGTCGTGCGCGTACAGCGCCGCATGCTC
CAGGAACGCGGGTACGAGCCCACCGCCGAAGAGGTCGCCGTCCACCTCGAGCTGACCCCCGAGCGGGTCCTGGAGGTGCT
GCGCCTCGCCCAGGAGCCGGTCTCGCTCCACGCGCCGGTCGGCGAGGAGGACGACGTCGCCCTCGGTGACCTGATCGAGG
ACGGGGACGCGGCCTCGCCCATGGAGTCCGCCGCGTTCTTCCTGCTCCGCGAGCACCTGGAAGCCGTGCTGTCGACCCTC
GGCGAGCGCGAACGCAAGGTCGTCCAGCTGCGCTACGGCCTGGCCGACGGCCGGCCCCGCACACTGGAGGAGATCGGGCG
GATCTTCGGCGTGACGCGCGAGCGGATCCGGCAGATCGAGTCCAAGACGCTCAACAAGCTGCGCGACCACGCCTTCGCCG
ACCAGCTCCGCGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(83-116)

Sigma-70 region 2 (Sigma70_r2)

(148-217)

Sigma-70, region 4 (Sigma70_r4)

(316-368)

Sigma-70 region 3 (Sigma70_r3)

(227-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.279

90.289

0.373