Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   AB5J51_RS26565 Genome accession   NZ_CP165727
Coordinates   5802625..5804358 (-) Length   577 a.a.
NCBI ID   WP_053785324.1    Uniprot ID   -
Organism   Streptomyces sp. R33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5797625..5809358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J51_RS26545 (AB5J51_26585) - 5797802..5798806 (-) 1005 WP_053785327.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  AB5J51_RS26550 (AB5J51_26590) - 5798803..5799405 (-) 603 WP_369778800.1 hypothetical protein -
  AB5J51_RS26555 (AB5J51_26595) rpoS 5799499..5800644 (+) 1146 WP_369778801.1 RNA polymerase sigma factor Regulator
  AB5J51_RS26560 (AB5J51_26600) rcrQ 5800706..5802628 (-) 1923 WP_053785325.1 ABC transporter ATP-binding protein Regulator
  AB5J51_RS26565 (AB5J51_26605) rcrP 5802625..5804358 (-) 1734 WP_053785324.1 ABC transporter ATP-binding protein Regulator
  AB5J51_RS26570 (AB5J51_26610) - 5804522..5805976 (-) 1455 WP_053785323.1 FGGY family carbohydrate kinase -
  AB5J51_RS26575 (AB5J51_26615) - 5806050..5806352 (-) 303 WP_369778802.1 YtxH domain-containing protein -
  AB5J51_RS26595 (AB5J51_26635) - 5807002..5808168 (-) 1167 WP_369778803.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62509.72 Da        Isoelectric Point: 5.6209

>NTDB_id=927675 AB5J51_RS26565 WP_053785324.1 5802625..5804358(-) (rcrP) [Streptomyces sp. R33]
MLIRLLRTHLSPYRKPIALLVLLQLLQTSAILYLPTLNADIIDNGVISGDTGYILRFGALMLGVSLVQLGCNIGAVYFGA
RTAAAVGRDIRASVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCIGGIAMALSLDVKLSGV
LVAVVPALGLSVGAIVFKTRPLFRKMQVRLDTVNRVLREQITGNRVIRAFVRDEYEKDRFRDANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRIDSGGMEIGQLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLDTESSVVP
PTEPIRKLLRRGVLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGHVLVDGEDVR
RIEPELLAKTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWRALEVAQAKDFVSALEGGLDAPVTQGGTNVSGGQRQRL
AIARTLVQGPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=927675 AB5J51_RS26565 WP_053785324.1 5802625..5804358(-) (rcrP) [Streptomyces sp. R33]
GTGCTCATACGACTTCTGCGGACCCATTTGAGTCCGTACCGGAAACCCATCGCCCTCCTGGTCCTGCTGCAACTGCTGCA
GACCAGCGCGATCCTCTACCTCCCCACTCTGAACGCGGACATCATCGACAACGGTGTCATCAGCGGGGACACCGGCTACA
TCCTGCGCTTCGGCGCCCTGATGCTCGGCGTCTCCCTCGTCCAGCTCGGGTGCAACATCGGCGCCGTCTACTTCGGCGCC
CGTACCGCGGCCGCCGTCGGCCGCGACATCCGCGCGTCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGGGAGCTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACCCGTACGACGAACGACGTGCAGCAGATCCAGATGCTGGTGCTGATGACCTTCA
CGCTGATGGTCTCCGCGCCGATCATGTGCATCGGCGGCATCGCCATGGCGCTCTCGCTCGACGTGAAGCTGTCGGGCGTC
CTGGTGGCCGTGGTCCCCGCCCTCGGCCTGTCGGTCGGCGCGATCGTCTTCAAGACGCGGCCGCTGTTCCGGAAGATGCA
GGTCCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTGCGCGACG
AGTACGAGAAGGACCGGTTCCGGGACGCCAACGCGGACCTGACCGGTGTCTCCCTCGCGGCCGGCAAGCTGCTCGCGCTC
ATGTTCCCGACCGTGATCGTCGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCATCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCACCGAGCCGATCCGCAAGCTCCTGCGCCGCGGCGTGCTGGAGCTGCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGCGCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACGGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTGGGCCTGGTGCCCCGGCTGTTCGACGCGACCGGCGGCCACGTGCTGGTCGACGGGGAGGACGTACGC
CGCATCGAGCCGGAGCTGCTGGCCAAGACTGTGGGCATGGTCCCGCAGAAGCCCTACCTCTTCTCCGGAACCGTCGCCTC
CAACCTGCGGTACGGGCGTCCCGACGCCACCGACGAGGAGCTGTGGCGCGCGCTGGAAGTGGCGCAGGCCAAGGACTTCG
TGTCCGCACTGGAGGGCGGTCTGGACGCGCCCGTCACCCAGGGCGGAACCAATGTCTCCGGAGGCCAGCGCCAGCGCCTG
GCCATCGCCCGCACGCTGGTGCAGGGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACGGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GCGACGCCGACCGGATCATCGTCCTGGACGAGGGCCAGGTCGTGGGCGAGGGGCGCCATCACGAGCTGATGGCCGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.175

100

0.395