Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB5J51_RS26560 Genome accession   NZ_CP165727
Coordinates   5800706..5802628 (-) Length   640 a.a.
NCBI ID   WP_053785325.1    Uniprot ID   -
Organism   Streptomyces sp. R33     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5795706..5807628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J51_RS26540 (AB5J51_26580) - 5795758..5797836 (+) 2079 WP_369778799.1 molybdopterin oxidoreductase family protein -
  AB5J51_RS26545 (AB5J51_26585) - 5797802..5798806 (-) 1005 WP_053785327.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  AB5J51_RS26550 (AB5J51_26590) - 5798803..5799405 (-) 603 WP_369778800.1 hypothetical protein -
  AB5J51_RS26555 (AB5J51_26595) rpoS 5799499..5800644 (+) 1146 WP_369778801.1 RNA polymerase sigma factor Regulator
  AB5J51_RS26560 (AB5J51_26600) rcrQ 5800706..5802628 (-) 1923 WP_053785325.1 ABC transporter ATP-binding protein Regulator
  AB5J51_RS26565 (AB5J51_26605) rcrP 5802625..5804358 (-) 1734 WP_053785324.1 ABC transporter ATP-binding protein Regulator
  AB5J51_RS26570 (AB5J51_26610) - 5804522..5805976 (-) 1455 WP_053785323.1 FGGY family carbohydrate kinase -
  AB5J51_RS26575 (AB5J51_26615) - 5806050..5806352 (-) 303 WP_369778802.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68865.42 Da        Isoelectric Point: 5.1146

>NTDB_id=927674 AB5J51_RS26560 WP_053785325.1 5800706..5802628(-) (rcrQ) [Streptomyces sp. R33]
MSGPGGRMMMGPAERSLDFKGSGKRLLRQIAYDRAKLWGMVLAVVGSVTCSVIGPKILGEATDLVFAGIVGRQMPAGITK
QQALDGLRAKGEGGMADMLSGTDFTPGEGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHIMNGTVYRMREELQGKLS
RLPLSYFDRQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLTMMLWISPLLALVALLTIPVSVFVAAKIGKKS
QPQFVAQWKSTGALNAHIEEMYSGHALVKVFGRQKESAAVFAEQNEALYRASFKAQLVSGIMQPVMVFISNINYVLVAVV
GGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAQEQEPDAEVPERPEQLRGQVTLDKV
AFRYEPDKPLIENLSLSVEPGNTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRSGIGMVLQDTWL
FGGTIAENIAYGAAREVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLAADGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=927674 AB5J51_RS26560 WP_053785325.1 5800706..5802628(-) (rcrQ) [Streptomyces sp. R33]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCGAGCGGTCCCTGGATTTCAAGGGCTCGGGCAAACGGCTGCT
GCGCCAGATCGCGTACGACAGGGCCAAGCTGTGGGGCATGGTCCTCGCCGTCGTCGGCAGCGTCACCTGCTCGGTCATCG
GCCCGAAGATCCTCGGTGAGGCCACCGACCTGGTGTTCGCGGGTATCGTCGGCCGGCAGATGCCGGCCGGGATCACCAAG
CAGCAGGCGCTGGACGGGCTGCGCGCCAAGGGCGAGGGCGGGATGGCGGACATGCTGTCCGGCACCGACTTCACCCCCGG
CGAGGGCATCGACTTCGGTGCCGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACCCTCGCCGGCCTGCTGATGC
TGGTCGCGACGCGGCTGTCGAACCACATCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTGCAGGGGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGCAGAAGCGCGGTGAGGTGCTGAGCCGGGCCACCAACGACATCGACAACATCGG
GCAGACGCTGCAGCAGACGATGGGTCAGCTGCTCAACTCGCTGCTGACGATCGTCGGTGTGCTGACGATGATGCTCTGGA
TCTCCCCGCTGCTGGCGCTGGTCGCCCTGCTGACGATTCCGGTCTCGGTCTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCACAGTTCGTGGCGCAGTGGAAGTCCACGGGCGCGCTCAACGCGCACATCGAGGAGATGTACTCGGGCCACGCGCT
GGTCAAGGTCTTCGGACGGCAGAAGGAGTCCGCGGCCGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGGATCATGCAGCCGGTGATGGTCTTCATCTCGAACATCAACTACGTGCTGGTGGCGGTCGTC
GGCGGTCTGCGGGTGGCCTCGGGCAGCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGTGTCGCCTCGGCGGAGCGCGTGTACGAGCTGCTGG
ACGCGCAGGAGCAGGAGCCGGACGCCGAGGTGCCGGAGCGGCCGGAGCAGCTGCGCGGCCAGGTCACGCTCGACAAGGTG
GCCTTCCGGTACGAGCCGGACAAGCCGCTGATCGAGAACCTGTCGCTGAGCGTCGAGCCCGGCAACACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCGAGATCGCCC
TCGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCAGCGGGATCGGCATGGTGCTCCAGGACACGTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCGGCCCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCCGCCCACGCGGACCGGTTCGTCCGCACCCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATTGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGTCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGATGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGGGCACGC
ACGAGGAGCTGCTGGCGGCGGACGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(54-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.615

96.563

0.392