Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   VP466_RS04720 Genome accession   NZ_CP142895
Coordinates   998575..999315 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain B20AB10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 993575..1004315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP466_RS04705 (VP466_04710) ponA 994161..996716 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  VP466_RS04710 (VP466_04715) pilM 996879..997937 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  VP466_RS04715 (VP466_04720) pilN 997937..998578 (+) 642 WP_000201227.1 PilN domain-containing protein Machinery gene
  VP466_RS04720 (VP466_04725) pilO 998575..999315 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  VP466_RS04725 (VP466_04730) pilP 999326..999853 (+) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  VP466_RS04730 (VP466_04735) pilQ 999921..1002083 (+) 2163 WP_033503048.1 type IV pilus secretin PilQ family protein Machinery gene
  VP466_RS04735 (VP466_04740) aroK 1002095..1002664 (+) 570 WP_000643712.1 shikimate kinase AroK -
  VP466_RS04740 (VP466_04745) aroB 1002693..1003775 (+) 1083 WP_001193997.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=927562 VP466_RS04720 WP_000076101.1 998575..999315(+) (pilO) [Acinetobacter baumannii strain B20AB10]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=927562 VP466_RS04720 WP_000076101.1 998575..999315(+) (pilO) [Acinetobacter baumannii strain B20AB10]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGCATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterProScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683