Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MWM11_RS03020 Genome accession   NZ_AP025565
Coordinates   594117..594593 (+) Length   158 a.a.
NCBI ID   WP_002607227.1    Uniprot ID   -
Organism   [Clostridium] innocuum strain CE91-St51     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 589117..599593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM11_RS02995 (CE91St51_06110) - 589592..590695 (+) 1104 WP_008818444.1 M24 family metallopeptidase -
  MWM11_RS03000 (CE91St51_06120) - 590685..591869 (+) 1185 WP_008818445.1 MalY/PatB family protein -
  MWM11_RS03005 (CE91St51_06130) - 591874..592509 (+) 636 WP_008818446.1 RDD family protein -
  MWM11_RS03010 (CE91St51_06140) - 592664..592882 (-) 219 WP_008818447.1 hypothetical protein -
  MWM11_RS03015 (CE91St51_06160) rpsF 593804..594097 (+) 294 WP_002607226.1 30S ribosomal protein S6 -
  MWM11_RS03020 (CE91St51_06170) ssbA 594117..594593 (+) 477 WP_002607227.1 single-stranded DNA-binding protein Machinery gene
  MWM11_RS03025 (CE91St51_06180) rpsR 594614..594844 (+) 231 WP_002607228.1 30S ribosomal protein S18 -
  MWM11_RS03030 (CE91St51_06190) - 594960..595883 (+) 924 WP_008818449.1 DUF2232 domain-containing protein -
  MWM11_RS03035 (CE91St51_06200) - 595861..597858 (+) 1998 WP_009269840.1 DHH family phosphoesterase -
  MWM11_RS03040 (CE91St51_06210) rplI 597836..598282 (+) 447 WP_002607231.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17222.77 Da        Isoelectric Point: 4.6847

>NTDB_id=92755 MWM11_RS03020 WP_002607227.1 594117..594593(+) (ssbA) [[Clostridium] innocuum strain CE91-St51]
MINRVVLVGRLTKDPVLRKTANGASVVSFTVACTRRFKQEGQPDADFINTVAWNKTADIVSQYTHKGSLVGVEGRIQTRS
YDDQSGKRVYVTEVVADSVQFLESKSAAASNANSNAYVPDYDQGSNQGYQSDNSSSQSYSNDFTSSDTLDIASDDLPF

Nucleotide


Download         Length: 477 bp        

>NTDB_id=92755 MWM11_RS03020 WP_002607227.1 594117..594593(+) (ssbA) [[Clostridium] innocuum strain CE91-St51]
ATGATCAATAGAGTCGTATTAGTCGGTCGTTTAACGAAAGATCCTGTCTTGCGTAAGACTGCAAACGGTGCATCTGTTGT
TTCTTTTACTGTAGCATGTACCCGCCGTTTCAAGCAGGAGGGACAGCCGGACGCTGATTTCATCAACACGGTTGCCTGGA
ATAAAACAGCGGATATCGTATCACAGTATACACATAAAGGATCACTGGTCGGTGTGGAAGGAAGAATCCAGACACGCAGC
TATGATGATCAGAGTGGGAAACGCGTTTATGTAACAGAAGTTGTCGCAGACAGCGTACAGTTTCTGGAAAGCAAAAGCGC
TGCCGCAAGCAATGCGAACAGCAATGCCTATGTACCTGATTATGATCAGGGAAGCAATCAGGGCTACCAGAGTGACAACA
GCAGCTCCCAGTCCTACTCCAATGACTTTACAAGCAGCGATACACTGGATATCGCAAGTGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.977

100

0.525
  ssb Latilactobacillus sakei subsp. sakei 23K

45.714

100

0.506
  ssbB Bacillus subtilis subsp. subtilis str. 168

55.66

67.089

0.373

Multiple sequence alignment