Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   VP464_RS06540 Genome accession   NZ_CP142892
Coordinates   1340273..1340656 (+) Length   127 a.a.
NCBI ID   WP_033915473.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain B20AB01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1338505..1339434 1340273..1340656 flank 839


Gene organization within MGE regions


Location: 1338505..1340656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP464_RS06530 (VP464_06535) - 1338505..1339434 (+) 930 WP_001091151.1 IS5-like element ISAba10 family transposase -
  VP464_RS06535 (VP464_06540) - 1339487..1339990 (-) 504 Protein_1229 hypothetical protein -
  VP464_RS06540 (VP464_06545) pilG 1340273..1340656 (+) 384 WP_033915473.1 twitching motility response regulator PilG Regulator

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14234.25 Da        Isoelectric Point: 4.5762

>NTDB_id=927529 VP464_RS06540 WP_033915473.1 1340273..1340656(+) (pilG) [Acinetobacter baumannii strain B20AB01]
MEDAFQNLKVMVIDDSKTIRRTAETLLQREGCEVITAVDGFEALSKIAEANPDIVFVDIMMPRLDGYQTCALIKNSQNYQ
NIPVIMLSSKDGFFDQAKGRVVGSDEYLTKPFSKDELLNAIRNHVSS

Nucleotide


Download         Length: 384 bp        

>NTDB_id=927529 VP464_RS06540 WP_033915473.1 1340273..1340656(+) (pilG) [Acinetobacter baumannii strain B20AB01]
ATGGAAGATGCATTCCAAAATCTGAAAGTAATGGTTATTGATGACTCAAAAACTATTCGCCGTACCGCAGAAACTCTATT
GCAACGCGAAGGTTGCGAAGTGATTACTGCTGTCGATGGATTTGAAGCTTTATCTAAAATTGCTGAAGCGAATCCGGATA
TTGTTTTTGTAGATATCATGATGCCTCGTTTAGACGGTTATCAAACTTGTGCTCTGATTAAGAACTCTCAAAATTATCAG
AACATTCCCGTTATCATGCTCTCTAGTAAAGATGGTTTTTTTGATCAGGCAAAAGGGCGTGTGGTAGGTTCAGATGAATA
CTTGACGAAACCTTTTAGCAAAGATGAATTGCTAAATGCGATTCGTAATCATGTAAGTTCATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

99.213

100

0.992
  vicR Streptococcus mutans UA159

42.735

92.126

0.394
  pilH Synechocystis sp. PCC 6803

41.593

88.976

0.37