Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   VP464_RS04990 Genome accession   NZ_CP142892
Coordinates   1034318..1034800 (+) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain B20AB01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1029318..1039800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP464_RS04980 (VP464_04985) pilX 1029621..1030439 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  VP464_RS04985 (VP464_04990) pilY1 1030451..1034305 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  VP464_RS04990 (VP464_04995) pilY2 1034318..1034800 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  VP464_RS04995 (VP464_05000) pilE 1034797..1035222 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  VP464_RS05000 (VP464_05005) rpsP 1035369..1035620 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  VP464_RS05005 (VP464_05010) rimM 1035640..1036188 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  VP464_RS05010 (VP464_05015) trmD 1036234..1036974 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VP464_RS05015 (VP464_05020) rplS 1037183..1037551 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  VP464_RS05020 (VP464_05025) - 1037604..1038545 (-) 942 WP_085916958.1 lipase family alpha/beta hydrolase -
  VP464_RS05025 (VP464_05030) - 1038660..1039694 (-) 1035 WP_001189447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=927524 VP464_RS04990 WP_001046420.1 1034318..1034800(+) (pilY2) [Acinetobacter baumannii strain B20AB01]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=927524 VP464_RS04990 WP_001046420.1 1034318..1034800(+) (pilY2) [Acinetobacter baumannii strain B20AB01]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431