Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   VP464_RS04980 Genome accession   NZ_CP142892
Coordinates   1029621..1030439 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain B20AB01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1024621..1035439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP464_RS04945 (VP464_04950) - 1025204..1025333 (-) 130 Protein_926 hypothetical protein -
  VP464_RS04950 (VP464_04955) rpoZ 1025372..1025650 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  VP464_RS04955 (VP464_04960) gmk 1025723..1026352 (-) 630 WP_000015937.1 guanylate kinase -
  VP464_RS04960 (VP464_04965) ispH 1026475..1027425 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  VP464_RS04965 (VP464_04970) fimU 1027595..1028068 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  VP464_RS04970 (VP464_04975) pilV 1028062..1028622 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  VP464_RS04975 (VP464_04980) pilW 1028623..1029624 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  VP464_RS04980 (VP464_04985) pilX 1029621..1030439 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  VP464_RS04985 (VP464_04990) pilY1 1030451..1034305 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  VP464_RS04990 (VP464_04995) pilY2 1034318..1034800 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  VP464_RS04995 (VP464_05000) pilE 1034797..1035222 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=927522 VP464_RS04980 WP_000149374.1 1029621..1030439(+) (pilX) [Acinetobacter baumannii strain B20AB01]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=927522 VP464_RS04980 WP_000149374.1 1029621..1030439(+) (pilX) [Acinetobacter baumannii strain B20AB01]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993