Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   VP464_RS04965 Genome accession   NZ_CP142892
Coordinates   1027595..1028068 (+) Length   157 a.a.
NCBI ID   WP_001214061.1    Uniprot ID   A0A219CC01
Organism   Acinetobacter baumannii strain B20AB01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1022595..1033068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP464_RS04940 (VP464_04945) - 1023059..1025164 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  VP464_RS04945 (VP464_04950) - 1025204..1025333 (-) 130 Protein_926 hypothetical protein -
  VP464_RS04950 (VP464_04955) rpoZ 1025372..1025650 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  VP464_RS04955 (VP464_04960) gmk 1025723..1026352 (-) 630 WP_000015937.1 guanylate kinase -
  VP464_RS04960 (VP464_04965) ispH 1026475..1027425 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  VP464_RS04965 (VP464_04970) fimU 1027595..1028068 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  VP464_RS04970 (VP464_04975) pilV 1028062..1028622 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  VP464_RS04975 (VP464_04980) pilW 1028623..1029624 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  VP464_RS04980 (VP464_04985) pilX 1029621..1030439 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16836.40 Da        Isoelectric Point: 8.5355

>NTDB_id=927519 VP464_RS04965 WP_001214061.1 1027595..1028068(+) (fimU) [Acinetobacter baumannii strain B20AB01]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILSKLGTLVFKAEENC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=927519 VP464_RS04965 WP_001214061.1 1027595..1028068(+) (fimU) [Acinetobacter baumannii strain B20AB01]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACTACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGTCCAAGCTTGGCACTTTGGTTTTTAAGGCCGAGGAGAATTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-147)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A219CC01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987