Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   VXM67_RS09215 Genome accession   NZ_CP142890
Coordinates   2034863..2037100 (+) Length   745 a.a.
NCBI ID   WP_367237634.1    Uniprot ID   -
Organism   Pseudomonas sp. Rh2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2029863..2042100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM67_RS09195 (VXM67_09190) - 2031740..2032363 (+) 624 WP_027907741.1 glutathione S-transferase -
  VXM67_RS09200 (VXM67_09195) - 2032496..2033428 (+) 933 WP_023379389.1 ABC transporter ATP-binding protein -
  VXM67_RS09205 (VXM67_09200) - 2033425..2034204 (+) 780 WP_027907742.1 ABC transporter permease -
  VXM67_RS09210 (VXM67_09205) - 2034088..2034720 (-) 633 WP_155950794.1 DUF2062 domain-containing protein -
  VXM67_RS09215 (VXM67_09210) comA 2034863..2037100 (+) 2238 WP_367237634.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VXM67_RS09220 (VXM67_09215) exbB 2037227..2037862 (+) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VXM67_RS09225 (VXM67_09220) - 2037859..2038293 (+) 435 WP_023379395.1 biopolymer transporter ExbD -
  VXM67_RS09230 (VXM67_09225) lpxK 2038293..2039294 (+) 1002 WP_023379396.1 tetraacyldisaccharide 4'-kinase -
  VXM67_RS09235 (VXM67_09230) - 2039339..2039524 (+) 186 WP_003247142.1 Trm112 family protein -
  VXM67_RS09240 (VXM67_09235) kdsB 2039521..2040285 (+) 765 WP_027907743.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VXM67_RS09245 (VXM67_09240) - 2040285..2040749 (+) 465 WP_023379398.1 low molecular weight protein-tyrosine-phosphatase -
  VXM67_RS09250 (VXM67_09245) murB 2040746..2041765 (+) 1020 WP_027907744.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 80587.66 Da        Isoelectric Point: 10.5343

>NTDB_id=927482 VXM67_RS09215 WP_367237634.1 2034863..2037100(+) (comA) [Pseudomonas sp. Rh2]
MRKGMLALAIGLLCLGFLPALPSVGWLLLLLCCGLGCLCVRWWPVACFLLGVCWACWSAQQALDDRLAPQLDGRTLWLEG
RVVGLPTRTAQGVRFELSQPLSRRAELPTRLQLSWFDGPPLRAGEHWRLAVTLQRPTGLLNPHGPDREASLLARRIGATG
TVKAGEKLSSVAGSWRDQLRQRLLAVQAQGREAALVALVLGDGAALARDDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPHRQPWLPWACGLAMAAALGYGGLAGWGVPVQRACLMLAVVLAWRLRFRHIGSGIPLLLALIAVLLFEPL
AALLPGFWLSFAAVAVLIYCFSARLGGWRPWQAWTRAQWVIAIGLLPVLLATGLPVSLSAPLANLFAVPLISLTVLPLAL
LGTLLLPLGSVGEGLLWLAGGLLELLFWLLGKVAGWRSAWMPAALPLWAWLLVAGGALLVLLPRGVPLRGLGGLMLLALW
VPPEQVPQGQVEVWQLDVGQGLAVLLRTRTHSLLYDAGPARGDSDLGEWVVLPTLRKLGVSRLDMMLISHAHADHAGGAQ
AVARGLPIGRLLAGEAQALSGAQPCVSDERWEWDGVRFSLWRWPEAQGSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AASEQPDIDWLQSPHHGSRTSSTEAFIKATKPRGVLISRGRNNGFGHPHPQVIERYRRHGVVIHDTAVEGALRLRLGHRG
GVEGLRAQRRFWRAAAPSPSSQVKR

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=927482 VXM67_RS09215 WP_367237634.1 2034863..2037100(+) (comA) [Pseudomonas sp. Rh2]
ATGCGCAAAGGGATGCTTGCGCTCGCCATTGGGCTGTTGTGCCTGGGGTTTCTGCCGGCCTTGCCGTCGGTCGGCTGGCT
ATTGCTGTTGCTGTGCTGTGGCTTGGGCTGCCTGTGTGTTCGGTGGTGGCCGGTCGCCTGTTTTCTGCTGGGCGTGTGCT
GGGCCTGCTGGTCGGCCCAGCAGGCCCTGGATGATCGGTTGGCGCCGCAGCTCGATGGCCGTACGTTATGGCTGGAGGGC
AGGGTGGTCGGGTTGCCGACTCGCACCGCGCAAGGCGTGCGTTTTGAGTTGTCGCAGCCACTCTCGCGCCGAGCCGAGTT
ACCGACCCGTCTGCAACTGAGCTGGTTCGACGGTCCGCCGCTGCGCGCGGGCGAACACTGGCGTCTGGCCGTCACCTTGC
AGCGCCCGACAGGCTTGCTCAACCCCCATGGTCCGGACCGCGAGGCAAGCCTGTTGGCCCGACGGATCGGCGCAACCGGC
ACGGTCAAGGCCGGCGAGAAGCTGTCGTCCGTAGCGGGCAGTTGGCGCGACCAACTGCGTCAGCGGCTGCTCGCGGTCCA
GGCACAGGGCCGTGAAGCCGCGCTGGTTGCCTTGGTGTTGGGCGATGGAGCGGCATTGGCCCGGGACGATTGGCAAACCC
TGCAGGCCACGGGCACGGTGCACTTGCTGGTCATCTCCGGGCAACACATCGGTCTGGTGGCCGGCCTGCTGTACGGGTTG
GTCGCCGGGCTGGCGCGCTGGGGGCTCTGGCCTCATCGCCAGCCTTGGCTGCCGTGGGCCTGTGGCCTGGCCATGGCGGC
GGCGCTGGGGTATGGCGGGCTGGCGGGGTGGGGCGTGCCGGTGCAGCGAGCCTGTTTGATGTTGGCCGTGGTACTGGCCT
GGCGCCTGCGCTTCCGCCACATCGGTTCCGGGATACCCTTGCTGTTGGCGCTCATCGCGGTGCTGTTGTTCGAGCCATTG
GCTGCGTTGTTGCCCGGGTTCTGGTTGTCTTTCGCCGCGGTGGCCGTACTCATTTACTGCTTCAGCGCACGTCTGGGTGG
CTGGCGACCCTGGCAAGCCTGGACCCGTGCGCAGTGGGTAATCGCCATTGGCCTGCTGCCAGTGTTGCTCGCCACAGGGC
TGCCGGTCAGCCTGAGTGCGCCCCTGGCCAACCTCTTTGCAGTGCCCTTGATCAGCCTGACGGTGTTGCCGCTGGCGTTG
CTCGGCACGCTGCTGCTGCCATTGGGCAGTGTGGGCGAGGGCTTGCTGTGGCTGGCGGGTGGCTTGTTGGAGCTGCTCTT
CTGGCTTTTGGGCAAGGTGGCGGGTTGGCGTTCTGCCTGGATGCCCGCTGCATTGCCCCTGTGGGCATGGCTGTTGGTGG
CGGGCGGGGCACTGCTGGTGTTGTTGCCCAGAGGCGTGCCACTGCGTGGCTTGGGTGGGTTGATGCTGCTGGCCTTGTGG
GTACCGCCAGAGCAGGTGCCGCAGGGGCAGGTGGAGGTCTGGCAATTGGATGTCGGCCAAGGGTTGGCGGTACTGCTGCG
AACCCGAACCCACAGCCTTCTGTACGATGCAGGGCCGGCACGCGGTGACAGCGACCTAGGTGAATGGGTGGTGCTGCCGA
CCCTGCGCAAGCTGGGGGTGAGCCGCCTGGACATGATGCTGATCAGCCATGCCCATGCCGACCACGCCGGTGGCGCGCAG
GCTGTGGCGCGCGGGTTGCCCATCGGGCGCCTGCTGGCGGGAGAGGCACAGGCGCTGTCTGGAGCGCAGCCCTGCGTCAG
CGATGAGCGCTGGGAATGGGATGGCGTGCGCTTTTCGCTGTGGCGATGGCCCGAGGCGCAAGGCAGCAATGACCGCTCTT
GCGTGCTACTGGTCGAGGCGCAAGGCGAGCGGCTGCTTTTGGCGGGTGACATGGAGGCGGGTGCCGAGCGTGCCTGGCTG
GCCGCCAGCGAGCAGCCCGACATCGACTGGTTGCAATCGCCCCATCACGGTAGTCGCACGTCGTCCACCGAGGCTTTCAT
CAAGGCCACCAAGCCGCGTGGCGTGTTGATTTCGCGAGGGCGCAACAATGGGTTTGGCCATCCGCACCCGCAGGTGATCG
AACGCTACCGGCGCCATGGCGTGGTGATTCATGATACGGCGGTGGAGGGGGCATTGCGCTTGCGCCTGGGGCATCGCGGT
GGGGTAGAGGGCCTGCGTGCGCAGCGGCGTTTCTGGCGTGCGGCAGCCCCCTCGCCATCCAGCCAGGTAAAGCGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-676)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.192

96.376

0.57
  comA Ralstonia pseudosolanacearum GMI1000

35.606

100

0.379