Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   VXM67_RS09220 Genome accession   NZ_CP142890
Coordinates   2037227..2037862 (+) Length   211 a.a.
NCBI ID   WP_023379394.1    Uniprot ID   A0A2G8MZK3
Organism   Pseudomonas sp. Rh2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2032227..2042862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXM67_RS09200 (VXM67_09195) - 2032496..2033428 (+) 933 WP_023379389.1 ABC transporter ATP-binding protein -
  VXM67_RS09205 (VXM67_09200) - 2033425..2034204 (+) 780 WP_027907742.1 ABC transporter permease -
  VXM67_RS09210 (VXM67_09205) - 2034088..2034720 (-) 633 WP_155950794.1 DUF2062 domain-containing protein -
  VXM67_RS09215 (VXM67_09210) comA 2034863..2037100 (+) 2238 WP_367237634.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  VXM67_RS09220 (VXM67_09215) exbB 2037227..2037862 (+) 636 WP_023379394.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  VXM67_RS09225 (VXM67_09220) - 2037859..2038293 (+) 435 WP_023379395.1 biopolymer transporter ExbD -
  VXM67_RS09230 (VXM67_09225) lpxK 2038293..2039294 (+) 1002 WP_023379396.1 tetraacyldisaccharide 4'-kinase -
  VXM67_RS09235 (VXM67_09230) - 2039339..2039524 (+) 186 WP_003247142.1 Trm112 family protein -
  VXM67_RS09240 (VXM67_09235) kdsB 2039521..2040285 (+) 765 WP_027907743.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  VXM67_RS09245 (VXM67_09240) - 2040285..2040749 (+) 465 WP_023379398.1 low molecular weight protein-tyrosine-phosphatase -
  VXM67_RS09250 (VXM67_09245) murB 2040746..2041765 (+) 1020 WP_027907744.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22827.11 Da        Isoelectric Point: 7.3616

>NTDB_id=927483 VXM67_RS09220 WP_023379394.1 2037227..2037862(+) (exbB) [Pseudomonas sp. Rh2]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=927483 VXM67_RS09220 WP_023379394.1 2037227..2037862(+) (exbB) [Pseudomonas sp. Rh2]
GTGTGGGAATTGGTCAAGTCCGGCGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCCGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGTGTCACTCCGCCGCACCTGTTGGGCCAGGTGTGGATCTGGATCAAGGACA
AACAGCTTACCAGTGACAAGCTCAAGGCCTTGCGCGCCGACTCGCCGCTGGGTGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAACTGGAGCGCTACAT
CAGCACCTTGGGCACCATCGCCGCCATGGCTCCGCTGCTCGGCCTGCTGGGCACCGTGTTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAATGCTGCCGTGTTGGCCGGGGGGATCTCCAAGGCCCTGGTCACCACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCATCGCTTCCTGCTGCGCCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTGGAAGTGGCTGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8MZK3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829