Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VXJ98_RS04095 Genome accession   NZ_CP142855
Coordinates   828135..829007 (+) Length   290 a.a.
NCBI ID   WP_017174595.1    Uniprot ID   -
Organism   Staphylococcus hominis strain Sh8213     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 823135..834007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS04075 (VXJ98_04075) ylqF 824022..824906 (+) 885 WP_017174591.1 ribosome biogenesis GTPase YlqF -
  VXJ98_RS04080 (VXJ98_04080) - 824890..825657 (+) 768 WP_017174592.1 ribonuclease HII -
  VXJ98_RS04085 (VXJ98_04085) sucC 825784..826950 (+) 1167 WP_017174593.1 ADP-forming succinate--CoA ligase subunit beta -
  VXJ98_RS04090 (VXJ98_04090) sucD 826972..827877 (+) 906 WP_017174594.1 succinate--CoA ligase subunit alpha -
  VXJ98_RS04095 (VXJ98_04095) dprA 828135..829007 (+) 873 WP_017174595.1 DNA-processing protein DprA Machinery gene
  VXJ98_RS04100 (VXJ98_04100) topA 829146..831215 (+) 2070 WP_017174596.1 type I DNA topoisomerase -
  VXJ98_RS04105 (VXJ98_04105) trmFO 831239..832546 (+) 1308 WP_017174597.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  VXJ98_RS04110 (VXJ98_04110) xerC 832684..833577 (+) 894 WP_017174598.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33591.61 Da        Isoelectric Point: 8.7142

>NTDB_id=927408 VXJ98_RS04095 WP_017174595.1 828135..829007(+) (dprA) [Staphylococcus hominis strain Sh8213]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHDQFEMINDWESLYLKKKRFTQLTEISYDYIQTQLSRYQVNYVTSF
SSQYPSLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATNYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=927408 VXJ98_RS04095 WP_017174595.1 828135..829007(+) (dprA) [Staphylococcus hominis strain Sh8213]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGATCAATTTGAAATGATCAATGATTGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAACAGAGATTTCTTACGATTATATTCAAACCCAACTTTCTAGATATCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTTCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACGTATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACAAATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTTCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCATTATCCAAAGGAAACACGAAAGTTACGCAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTACTGCCTGGATCGATGTTTAATCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGCTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

54.325

99.655

0.541
  dprA Staphylococcus aureus N315

53.472

99.31

0.531
  dprA Streptococcus mutans UA159

36.77

100

0.369