Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   VXJ98_RS00430 Genome accession   NZ_CP142855
Coordinates   92900..94525 (+) Length   541 a.a.
NCBI ID   WP_017176077.1    Uniprot ID   -
Organism   Staphylococcus hominis strain Sh8213     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 87900..99525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS00415 (VXJ98_00415) ssb 89276..89572 (+) 297 WP_017176074.1 cassette chromosome ssDNA-binding protein -
  VXJ98_RS00420 (VXJ98_00420) cch1 89572..91341 (+) 1770 WP_017176075.1 cassette chromosome replicative helicase -
  VXJ98_RS00425 (VXJ98_00425) ccrA 91529..92866 (+) 1338 WP_017176076.1 cassette chromosome recombinase CcrA Machinery gene
  VXJ98_RS00430 (VXJ98_00430) ccrB 92900..94525 (+) 1626 WP_017176077.1 cassette chromosome recombinase CcrB Machinery gene
  VXJ98_RS00435 (VXJ98_00435) - 95048..95398 (+) 351 WP_037552474.1 SAUGI family uracil-DNA glycosylase inhibitor -
  VXJ98_RS00440 (VXJ98_00440) - 95485..95799 (+) 315 WP_037552475.1 DUF960 family protein -
  VXJ98_RS00445 (VXJ98_00445) - 95817..96320 (+) 504 WP_017175385.1 DUF1643 domain-containing protein -
  VXJ98_RS00450 (VXJ98_00450) - 96334..96555 (+) 222 WP_017175386.1 hypothetical protein -
  VXJ98_RS00455 (VXJ98_00455) - 96835..97056 (+) 222 Protein_88 spermidine acetyltransferase -
  VXJ98_RS00460 (VXJ98_00460) - 97149..98321 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 62311.27 Da        Isoelectric Point: 9.7603

>NTDB_id=927401 VXJ98_RS00430 WP_017176077.1 92900..94525(+) (ccrB) [Staphylococcus hominis strain Sh8213]
MDKMKKKLVGGYIRVSTERQVEGYSIEGQITQIEQYCQFNGYELVDIYADRGISGKSMNRPELQRMLNDAKNGKLDCVMV
YKTNRLARNTSDLLTIVEELHRQNVEFFSLSERMEVKNSTGKLMLQILASFSEFERNTILENIYTGQRQRALEGYYQGNL
PLGYNNIPDNKKELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVTYILSNPFYIGKIQFAKY
KDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNILTGLISCPQCSAPMAASNTTNTLKDG
TKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENQVDVAALNHDIAYKQQQFDE
ISTKLKNLIQTIENNPDLTSALKPTIHQYETQLNDITNQINQLKHQQNQEKPFYDTKQIAALLQRIFQNIESMDKSQLKA
LYLTVIDRIDIRKDENHKKQFFVTLKLNNEIIKQLFNNNNLDEVLLSTSSLFLPQTLYLTI

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=927401 VXJ98_RS00430 WP_017176077.1 92900..94525(+) (ccrB) [Staphylococcus hominis strain Sh8213]
ATGGATAAAATGAAGAAAAAGCTTGTAGGAGGCTACATTCGCGTATCCACAGAGAGACAAGTAGAGGGTTATAGCATCGA
GGGACAAATTACACAAATAGAGCAATATTGCCAATTTAATGGCTATGAACTCGTTGATATATATGCAGATCGGGGTATAT
CAGGAAAATCTATGAACCGTCCTGAATTACAGCGCATGTTAAATGATGCTAAAAATGGAAAATTAGACTGTGTTATGGTT
TATAAAACAAATCGTTTGGCACGTAATACTTCCGATTTACTTACAATCGTCGAAGAACTTCATCGCCAAAATGTTGAATT
TTTTAGCTTGTCTGAACGCATGGAAGTCAAAAATTCAACAGGCAAGTTAATGCTCCAGATACTTGCAAGTTTTTCCGAAT
TTGAAAGAAATACAATTTTAGAGAACATTTACACCGGACAACGTCAAAGAGCTTTAGAGGGCTATTATCAAGGCAATCTT
CCATTAGGATATAATAACATACCTGATAATAAAAAAGAATTAATGATTAATCAACATGAAGCTAACATCGTTAAATATAT
CTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATAGCCAATGCACTCAATCATAAGGGTTATGTCACTAAGAAAG
GTAATCCATTTAGTATTTCAGCTGTTACTTATATTCTCTCAAACCCATTCTATATTGGTAAAATTCAATTCGCGAAATAC
AAAGATTGGAATGATAAACGACGTAAAGGATTAAACGATAAGCCAGTAATCGCTGAAGGTAAACACACGCCTATTATTAG
TCAATCATTATGGGATAAAGTGCAAGCACGTAAGAAACAAGTAAGTGAAAAACCACAAGTCCATGGTAAAGGAACCAATA
TTTTAACTGGATTAATTTCGTGTCCCCAATGTTCTGCACCTATGGCTGCGAGTAACACCACAAACACACTTAAAGATGGC
ACTAAAAAACGTATTCGTTACTATTCGTGTAGTAATTTTCGAAATAAAGGCTCAAAGGTATGTTCTGCGAATAGTGTTAG
AGCCGATGTCATTGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTGTCG
AACGTGTCAATCAAGAGAATCAAGTCGATGTAGCTGCACTTAACCATGATATTGCTTATAAACAACAACAATTTGATGAA
ATTAGCACTAAACTTAAAAATCTAATTCAAACCATCGAAAACAATCCAGACTTAACATCTGCACTCAAACCAACCATTCA
TCAATATGAAACACAACTGAATGATATCACAAACCAAATTAATCAACTCAAGCACCAACAAAATCAAGAGAAACCATTTT
ATGATACTAAACAAATCGCTGCTTTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTCAAAGCT
TTGTACCTAACGGTTATTGACCGTATTGACATTCGTAAAGATGAGAATCATAAAAAGCAATTCTTTGTTACACTAAAACT
TAATAATGAAATTATTAAACAACTTTTCAATAATAATAATCTAGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTTTGC
CACAAACCCTATATCTTACTATTTAG

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(11-154)

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-355)

Recombinase (Recombinase)

(179-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.443

100

0.806