Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   VXJ98_RS01130 Genome accession   NZ_CP142855
Coordinates   240835..242208 (+) Length   457 a.a.
NCBI ID   WP_017175304.1    Uniprot ID   A0A8I1BGM1
Organism   Staphylococcus hominis strain Sh8213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 235835..247208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VXJ98_RS01110 (VXJ98_01110) - 236158..236619 (+) 462 WP_002449017.1 CtsR family transcriptional regulator -
  VXJ98_RS01115 (VXJ98_01115) - 236651..237214 (+) 564 WP_017175301.1 UvrB/UvrC motif-containing protein -
  VXJ98_RS01120 (VXJ98_01120) - 237207..238214 (+) 1008 WP_017175302.1 protein arginine kinase -
  VXJ98_RS01125 (VXJ98_01125) - 238230..240701 (+) 2472 WP_017175303.1 ATP-dependent Clp protease ATP-binding subunit -
  VXJ98_RS01130 (VXJ98_01130) radA 240835..242208 (+) 1374 WP_017175304.1 DNA repair protein RadA Machinery gene
  VXJ98_RS01135 (VXJ98_01135) - 242231..243304 (+) 1074 WP_017175305.1 PIN/TRAM domain-containing protein -
  VXJ98_RS01140 (VXJ98_01140) gltX 243582..245036 (+) 1455 WP_017175306.1 glutamate--tRNA ligase -
  VXJ98_RS01145 (VXJ98_01145) cysE 245423..246052 (+) 630 WP_170999993.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50309.62 Da        Isoelectric Point: 7.0048

>NTDB_id=927403 VXJ98_RS01130 WP_017175304.1 240835..242208(+) (radA) [Staphylococcus hominis strain Sh8213]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKAKETQAKVQKLNSIKHEATPRVQTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVE
QERPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEGVQVVGVTTVHDALTYAFSNRSS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=927403 VXJ98_RS01130 WP_017175304.1 240835..242208(+) (radA) [Staphylococcus hominis strain Sh8213]
TTGGCCAAGAAAAAAGTAATTTTCGAATGTATGGCTTGTGGATATCAGTCTCCTAAATGGATGGGAAAATGTCCGAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTATTGAAAAGACTTCCAATCCAAAGCATGGCGTAAAAGCAAAAGAGACACAAG
CAAAAGTACAGAAATTAAATAGTATTAAGCATGAGGCAACACCGAGAGTTCAAACGGACTCTAAAGAATTTAATCGTGTA
CTTGGTGGTGGAATTGTTAGTGGATCACTCGTACTGATTGGCGGCGACCCGGGTATTGGGAAATCTACATTATTATTACA
GATTTGTGCATCGTTATCACAGAAACTTAATGTACTTTATATCACGGGTGAAGAATCACTAAATCAAACGAAATTGCGTG
CAGATCGTCTAGAGGAAGACTCTAGTAATTTAAATGTACTAGCTGAAACAGATTTAGAAGTTATTCATCAAACCGTGGAA
CAAGAGCGCCCAGACATACTTGTTGTCGATTCAATTCAAACGATTTATCATCCTGAGATTAGTTCAGCACCTGGCTCAGT
ATCACAAGTTCGAGAAAGTACACAAAGTTTAATGAATATTGCAAAACAAATGAATATCGCAACTTTTATAGTAGGTCACG
TAACAAAAGAAGGGCAAATTGCTGGTCCAAGACTATTAGAACATATGGTAGATACAGTTTTATACTTCGAAGGTGATGAA
CACCATGCTTATCGAATTCTAAGAGCAGTTAAAAATCGTTTTGGTTCAACAAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTGAAAGGGGTACAAAACCCTTCAGAAATGTTTTTAGAAGAACGCTCTACAAATGTTCCAGGATCAACAATTG
TGGCTACTATGGAAGGCACACGACCACTATTGATTGAGGTGCAATCTCTAGTAACACCTACTACATTTAATAATCCAAGA
CGAATGGCCACAGGCATCGACCACAATCGACTTAGCTTACTTATGGCTGTTTTAGAGAAAAAAGAAAATTATCTTTTACA
ACAACAAGATGCTTACATTAAAGTAGCGGGTGGAGTGAGACTTACTGAACCGGCTGTAGATTTAAGTATTATTGTAGCGA
CTGCTTCAAGTTTTAAAGATAAAGCCGTAGATGGTTTGGATTGTTATATTGGTGAAGTGGGATTAACTGGTGAGGTAAGA
CGAGTATCGCGTATCGAGCAACGTGTACAAGAAGCGGCAAAACTAGGATTTAAGAGAGTGATTATTCCCCAAACGAATAT
AGGTGGATGGACATTCCCAGAAGGTGTTCAGGTCGTTGGTGTGACAACGGTACATGATGCCTTAACATATGCGTTTAGTA
ATCGCTCATCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(75-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.929

98.906

0.652
  radA Streptococcus pneumoniae Rx1

58.94

99.125

0.584
  radA Streptococcus pneumoniae D39

58.94

99.125

0.584
  radA Streptococcus pneumoniae R6

58.94

99.125

0.584
  radA Streptococcus pneumoniae TIGR4

58.94

99.125

0.584
  radA Streptococcus mitis NCTC 12261

58.94

99.125

0.584
  radA Streptococcus mitis SK321

58.94

99.125

0.584