Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   AB6W33_RS10065 Genome accession   NZ_CP163561
Coordinates   1929579..1930088 (-) Length   169 a.a.
NCBI ID   WP_373660937.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS-B4009     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1924579..1935088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB6W33_RS10040 (AB6W33_10030) tsaD 1925092..1926102 (-) 1011 WP_000655087.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  AB6W33_RS10045 (AB6W33_10035) rimI 1926178..1926585 (-) 408 WP_000445945.1 ribosomal protein S18-alanine N-acetyltransferase -
  AB6W33_RS10050 (AB6W33_10040) tsaB 1926587..1927279 (-) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  AB6W33_RS10055 (AB6W33_10045) - 1927458..1927688 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  AB6W33_RS10060 (AB6W33_10050) rnjA 1927742..1929421 (+) 1680 WP_000065498.1 ribonuclease J1 -
  AB6W33_RS10065 (AB6W33_10055) lytF 1929579..1930088 (-) 510 WP_373660937.1 CHAP domain-containing protein Regulator
  AB6W33_RS10070 (AB6W33_10060) glnA 1930236..1931582 (-) 1347 WP_000156227.1 type I glutamate--ammonia ligase -
  AB6W33_RS10075 (AB6W33_10065) - 1931616..1931987 (-) 372 WP_000664338.1 MerR family transcriptional regulator -
  AB6W33_RS10080 (AB6W33_10070) - 1932067..1932606 (-) 540 WP_000854121.1 aromatic acid exporter family protein -
  AB6W33_RS10085 (AB6W33_10075) pgk 1932869..1934065 (-) 1197 WP_001096753.1 phosphoglycerate kinase -
  AB6W33_RS10090 (AB6W33_10080) - 1934200..1935069 (-) 870 WP_000858929.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18360.28 Da        Isoelectric Point: 4.4393

>NTDB_id=926834 AB6W33_RS10065 WP_373660937.1 1929579..1930088(-) (lytF) [Streptococcus agalactiae strain GBS-B4009]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
RWGNGGDWAASAASADYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=926834 AB6W33_RS10065 WP_373660937.1 1929579..1930088(-) (lytF) [Streptococcus agalactiae strain GBS-B4009]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
AGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGATTATACAGTAGGGACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTAACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

56.061

78.107

0.438
  lytF Streptococcus gordonii str. Challis substr. CH1

56.061

78.107

0.438
  SMU.836 Streptococcus mutans UA159

53.543

75.148

0.402