Detailed information NTG0092681

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HQS1_RS05785
• Genome accession: NZ_AP025556
• Coordinates: 1280307..1281200 (-)
• Length: 297 a.a.
• NCBI ID: WP_016445609.1
• Uniprot ID: A0A1H3L211
• Organism: Delftia lacustris strain HQS1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1275307..1286200

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HQS1_RS05755 (HQS1_11380)	argJ	1275630..1276862 (+)	1233	WP_017405522.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
HQS1_RS05760 (HQS1_11390)	-	1277028..1277987 (+)	960	WP_244387859.1	ATP-binding protein	-
HQS1_RS05765 (HQS1_11400)	mutT	1278038..1278544 (+)	507	WP_043789746.1	8-oxo-dGTP diphosphatase MutT	-
HQS1_RS05770 (HQS1_11410)	-	1278555..1278791 (-)	237	WP_223275109.1	DNA gyrase inhibitor YacG	-
HQS1_RS05775 (HQS1_11420)	zapD	1278809..1279564 (-)	756	WP_016445607.1	cell division protein ZapD	-
HQS1_RS05780 (HQS1_11430)	coaE	1279654..1280292 (-)	639	WP_016451024.1	dephospho-CoA kinase	-
HQS1_RS05785 (HQS1_11440)	pilD	1280307..1281200 (-)	894	WP_016445609.1	A24 family peptidase	Machinery gene
HQS1_RS05790 (HQS1_11450)	pilC	1281200..1282417 (-)	1218	WP_016445610.1	type II secretion system F family protein	Machinery gene
HQS1_RS05795 (HQS1_11460)	pilB	1282456..1284198 (-)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HQS1_RS05805 (HQS1_11470)	-	1284435..1285364 (-)	930	WP_034364039.1	polyprenyl synthetase family protein	-
HQS1_RS05810 (HQS1_11480)	rplU	1285595..1285906 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
HQS1_RS05815 (HQS1_11490)	rpmA	1285922..1286179 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.37 Da
• Isoelectric Point: 6.9135

>NTDB_id=92681 HQS1_RS05785 WP_016445609.1 1280307..1281200(-) (pilD) [Delftia lacustris strain HQS1]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=92681 HQS1_RS05785 WP_016445609.1 1280307..1281200(-) (pilD) [Delftia lacustris strain HQS1]
ATGGTTTTGGAGCTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAAAACATTCCCGTGCTCAGTTATCTGGCGCTGCGGGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

3D structure

• AlphaFold DB: A0A1H3L211

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407