Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   VJ143_RS20590 Genome accession   NZ_CP142740
Coordinates   4412322..4413449 (+) Length   375 a.a.
NCBI ID   WP_224964418.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 4407322..4418449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS20565 (VJ143_20575) - 4407493..4407735 (-) 243 WP_327857873.1 DUF4199 domain-containing protein -
  VJ143_RS20570 (VJ143_20580) - 4407778..4409856 (-) 2079 WP_327857874.1 TonB-dependent copper receptor -
  VJ143_RS20575 (VJ143_20585) - 4409927..4410394 (-) 468 WP_327857875.1 DUF2946 family protein -
  VJ143_RS20580 (VJ143_20590) def 4410493..4411023 (-) 531 WP_004723400.1 peptide deformylase -
  VJ143_RS20585 (VJ143_20595) tsaP 4411147..4412298 (+) 1152 WP_034618195.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  VJ143_RS20590 (VJ143_20600) dprA 4412322..4413449 (+) 1128 WP_224964418.1 DNA-processing protein DprA Machinery gene
  VJ143_RS20595 (VJ143_20605) - 4413496..4414065 (+) 570 WP_096735350.1 L-threonylcarbamoyladenylate synthase -
  VJ143_RS20600 (VJ143_20610) - 4414700..4415593 (-) 894 WP_004823721.1 DMT family transporter -
  VJ143_RS20605 (VJ143_20615) - 4415736..4416380 (-) 645 WP_004823720.1 TetR/AcrR family transcriptional regulator -
  VJ143_RS20610 (VJ143_20620) - 4416530..4417768 (+) 1239 WP_227515188.1 MFS transporter -

Sequence


Protein


Download         Length: 375 a.a.        Molecular weight: 42095.92 Da        Isoelectric Point: 6.4982

>NTDB_id=926666 VJ143_RS20590 WP_224964418.1 4412322..4413449(+) (dprA) [Acinetobacter guillouiae strain 13-3]
MLKQISNDQYDAIRLWYLVQHSLSAFRKLETHFGSIAKALQAENLNRWSEAKIHKNHLERASEFFTALGQSKFQVCFDKI
QQHTDFIVLDTDPHYPQQLLPYPDHPPILFGKGAFQNLSQPQIAIVGSRKPSPHGKQVAYDFAYYLSEKGFFITSGLALG
IDAAAHMGGLKHHRTIAVIGTGLDLVYPSQNRQLQEQILQHSGTILTEYLPETQPIQRNFPYRNRIVSGLSLGVVVAEAQ
LGSGSLITAQAAAEQGKVIFAIPGHIYGEHHQGCHQLIREGAILVDHPEQIVEDLALPTQWHCAQQSESLSPMPEIPEHL
FKLYQLLDWIGQDLDTLAQNANLDIAQLTSDLMELELLGHCIQQSGLYLRCRVSY

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=926666 VJ143_RS20590 WP_224964418.1 4412322..4413449(+) (dprA) [Acinetobacter guillouiae strain 13-3]
ATGTTGAAGCAAATATCCAATGACCAATATGATGCCATCAGACTTTGGTATTTGGTTCAACATTCGCTCAGCGCTTTTCG
TAAATTAGAAACACATTTTGGTTCTATCGCAAAAGCGCTGCAAGCTGAAAATTTAAACCGCTGGTCTGAAGCCAAAATTC
ATAAAAACCATCTTGAAAGAGCCAGTGAATTTTTCACTGCGCTTGGGCAATCCAAATTTCAAGTTTGCTTCGATAAAATT
CAACAACATACAGATTTTATTGTTTTAGATACCGACCCTCATTATCCTCAACAACTGCTACCTTATCCTGATCATCCACC
AATTCTATTTGGTAAAGGTGCATTTCAGAATCTAAGTCAACCGCAAATCGCCATCGTGGGTAGCCGAAAGCCAAGTCCGC
ATGGCAAACAAGTGGCTTATGATTTTGCTTACTATTTGAGTGAAAAGGGCTTTTTTATTACCAGTGGCCTAGCACTGGGA
ATTGATGCCGCTGCACATATGGGTGGACTAAAACACCATCGAACCATTGCGGTGATCGGTACAGGCTTAGATCTGGTTTA
TCCTAGTCAAAATAGACAGTTACAAGAACAAATTTTGCAGCATTCAGGAACGATTTTGACTGAATACCTGCCAGAAACTC
AGCCTATTCAGCGCAATTTTCCCTATCGAAATCGGATCGTGAGTGGTTTGAGCTTAGGTGTTGTTGTCGCAGAAGCACAA
CTGGGTAGTGGTTCACTGATTACGGCGCAAGCTGCCGCAGAACAAGGTAAAGTGATTTTTGCAATTCCAGGGCATATTTA
TGGAGAGCATCATCAAGGATGTCATCAGCTCATTCGTGAAGGGGCCATTCTGGTTGATCATCCTGAACAGATTGTTGAAG
ATTTAGCACTTCCCACCCAATGGCATTGTGCACAACAGTCTGAATCACTATCCCCAATGCCAGAAATTCCCGAGCATTTA
TTTAAGCTGTATCAATTGCTGGATTGGATTGGGCAAGACTTAGATACGCTTGCTCAAAACGCAAATTTAGACATTGCACA
ACTCACAAGCGATCTTATGGAATTAGAACTTTTGGGTCACTGTATTCAACAATCTGGGCTGTACTTACGTTGCCGAGTCA
GTTATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.267

100

0.643

  dprA Acinetobacter baumannii D1279779

63.733

100

0.637

  dprA Acinetobacter baylyi ADP1

61.097

100

0.624