Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   VJ143_RS08825 Genome accession   NZ_CP142740
Coordinates   1921234..1921944 (-) Length   236 a.a.
NCBI ID   WP_004721139.1    Uniprot ID   A0A077KYT9
Organism   Acinetobacter guillouiae strain 13-3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1916234..1926944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS08805 (VJ143_08805) - 1917627..1918418 (+) 792 WP_004820958.1 M48 family metallopeptidase -
  VJ143_RS08810 (VJ143_08810) - 1918559..1918864 (+) 306 WP_056510530.1 hypothetical protein -
  VJ143_RS08815 (VJ143_08815) - 1918976..1919761 (+) 786 WP_004721143.1 M48 family metallopeptidase -
  VJ143_RS08820 (VJ143_08820) - 1919856..1920905 (-) 1050 WP_327858551.1 NADP(H)-dependent aldo-keto reductase -
  VJ143_RS08825 (VJ143_08825) crp 1921234..1921944 (-) 711 WP_004721139.1 cAMP-activated global transcriptional regulator CRP Regulator
  VJ143_RS08830 (VJ143_08830) - 1922096..1922518 (+) 423 WP_004721138.1 OsmC family protein -
  VJ143_RS08835 (VJ143_08835) - 1922703..1923506 (-) 804 WP_412676243.1 peptidoglycan DD-metalloendopeptidase family protein -
  VJ143_RS08840 (VJ143_08840) - 1923804..1924247 (+) 444 WP_056510535.1 PAAR domain-containing protein -
  VJ143_RS08845 (VJ143_08845) - 1924240..1924791 (+) 552 WP_262779885.1 PAAR domain-containing protein -
  VJ143_RS08850 (VJ143_08850) - 1924795..1925409 (+) 615 WP_327858553.1 hypothetical protein -
  VJ143_RS08855 (VJ143_08855) - 1925411..1925878 (+) 468 WP_327858554.1 hypothetical protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26563.18 Da        Isoelectric Point: 4.6726

>NTDB_id=926645 VJ143_RS08825 WP_004721139.1 1921234..1921944(-) (crp) [Acinetobacter guillouiae strain 13-3]
MSSNFAQLSTDALSPGQLPESVKALLKRAHINRFPKRSTIIDAGSESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEQNPQRTAEVRTRDVCEIAEISYDNFHEISKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDVSLEESNFSEDELSTDDE

Nucleotide


Download         Length: 711 bp        

>NTDB_id=926645 VJ143_RS08825 WP_004721139.1 1921234..1921944(-) (crp) [Acinetobacter guillouiae strain 13-3]
ATGTCTTCTAATTTTGCACAACTTAGTACAGATGCTTTGTCTCCTGGTCAACTACCTGAGTCAGTCAAAGCTTTGCTCAA
AAGAGCCCACATCAATCGTTTTCCAAAACGCTCAACGATTATTGATGCAGGTTCAGAGTCAAAATCACTGTATTTAATTT
TAAAAGGTTCAGTTTCAATTATTTTACGTGAAGATGATGAACGTGAAATTGTTGTTGCATATTTGAACCCTGGGGACTTT
TTTGGGGAAATGGGATTATTTGAGCAGAATCCACAACGTACTGCGGAAGTAAGAACCCGTGACGTATGTGAAATTGCTGA
AATTTCATATGACAATTTCCACGAAATTAGTAAACAATATCCTGACTTAAGTTATGCCGTATTTGCACAACTTGTTCGTC
GTTTAAAAAATACAACACGCAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
CTTTCAGCACAGCCTGAAGCGATGATCTTGCCAAACGGTCGCCAAATCCGCATTACTCGCCAAGAAATTGGTCGTATCGT
AGGTTGTTCCCGTGAAATGGTTGGTCGTGTTCTAAAAACACTTGAAGAACAAGGCATGATCGAAACCGACGGTAAAGCCA
TCCTTATATTTGATGTATCTTTGGAAGAATCTAATTTTTCTGAAGACGAACTAAGCACAGATGATGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-219)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A077KYT9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

91.304

97.458

0.89
  crp Vibrio cholerae strain A1552

48.293

86.864

0.419
  crp Haemophilus influenzae Rd KW20

48.705

81.78

0.398