Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY1   Type   Machinery gene
Locus tag   VJ143_RS01745 Genome accession   NZ_CP142740
Coordinates   366913..370722 (+) Length   1269 a.a.
NCBI ID   WP_412676229.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361913..375722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS01715 (VJ143_01715) gmk 362187..362807 (-) 621 WP_034617459.1 guanylate kinase -
  VJ143_RS01720 (VJ143_01720) ispH 362942..363892 (+) 951 WP_004718298.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  VJ143_RS01725 (VJ143_01725) - 364035..364535 (+) 501 WP_224964620.1 GspH/FimT family pseudopilin -
  VJ143_RS01730 (VJ143_01730) pilV 364536..365084 (+) 549 WP_327858033.1 type IV pilus modification protein PilV Machinery gene
  VJ143_RS01735 (VJ143_01735) pilW 365093..366076 (+) 984 WP_327858034.1 PilW family protein Machinery gene
  VJ143_RS01740 (VJ143_01740) - 366145..366903 (+) 759 WP_412676228.1 hypothetical protein -
  VJ143_RS01745 (VJ143_01745) pilY1 366913..370722 (+) 3810 WP_412676229.1 pilus assembly protein PilY Machinery gene
  VJ143_RS01750 (VJ143_01750) - 370710..371309 (+) 600 WP_224964624.1 type IV pilin protein -
  VJ143_RS01755 (VJ143_01755) - 371309..371791 (+) 483 WP_324099787.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  VJ143_RS01760 (VJ143_01760) rpsP 371937..372194 (+) 258 WP_004718284.1 30S ribosomal protein S16 -
  VJ143_RS01765 (VJ143_01765) rimM 372222..372770 (+) 549 WP_004718282.1 ribosome maturation factor RimM -
  VJ143_RS01770 (VJ143_01770) trmD 372813..373553 (+) 741 WP_056516682.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VJ143_RS01775 (VJ143_01775) rplS 373826..374197 (+) 372 WP_004718278.1 50S ribosomal protein L19 -
  VJ143_RS01780 (VJ143_01780) - 374268..375236 (-) 969 WP_327858037.1 triacylglycerol lipase -

Sequence

Protein


Download         Length: 1269 a.a.        Molecular weight: 134881.11 Da        Isoelectric Point: 8.3156

>NTDB_id=926638 VJ143_RS01745 WP_412676229.1 366913..370722(+) (pilY1) [Acinetobacter guillouiae strain 13-3]
MKMKKQKNWLIPKLKYTQLSRGISFAAGFVGTTLIASSVVQASDLQIYATPTAGKKTIVMMLDTSGSMDGTDSGQTGKRI
TRLQNGMYNFLDSPNPIFKDVSVGLGRFFYSSGDGGRMLVEAQPLGEVGSAQRVALRNAVKNLSATDWTPSSHAYAEAAA
YLMGTSTLSKVTLDAGTNIVPVYFQRSGSNGAWYYCDGLNNLKNDCASWSSLSAAPSSADRGNNTISCNVYVPTLRGGTC
YRKTGKIIITQPNLDSGFSLADNSTIDSSDTSRYKSPLPEVDKRVSCDGQGIYFLSDGAANRTSSARSTALMSAALEGYG
ATFNCSGGLTGGGSDSGWDCMGEFAKKLYNKDTNPSGVSIQTAFVGFGNEMNNLANVYVQNACKLSSRTQADRTGDDACS
PGSGYYSVTSPGYGNGGFFTTQSAQGVTDSVVAFINNLGKAPLEPLTTGAISVPVDNLNPSGLQPYGYLRGLEPNPQASD
LIWVGNLKKYQVIQTGSNAGAFAAAGSKLVYDSQGGFNSGTRDLWNNSTVYNGKVYNDGGVIRLGGAYSKVPMPILGQTE
NLAADPPQYAYAANPNALRNLFTDVKATGGANLTNTGNNTSLIKVPEGNLPTSGISAYVLGQFKNQATLKDFPLLTKIKL
LNYLGFSVPYDETATALPTTLQTSNAPFLAMGGSIHSLPVQLTYSGTLDEKGNLTSTRSQSVLYGTMDGGLHIVDSSTGA
EQMVFVPAELLRSSLGSKALIKGQTDTDAPVSGTDGAWISDSTYKTQRGTGSDSSTVKALSMNIYGGMRMGGSSYYALDV
LNPSSPKLKFRLGADVSGFERIGQSWSKPVLANVRFNGVNKRVMIVGGGYDQCYENPQFELGKTVSNTDFPDTTCNNKAQ
AQGNAVYMVDADNGSLIWSATYGASTADADKKYLKHSIVSRISAIDRDGDGLVDNLYFADLGGQVFRADLDNYQTKSGSN
YSSFGVRVSRIANLASNDTINSKSWDYTGSKAPRFYEAPTLTIHDEGANTFLLVGLASGNRSTPLDVVPTVGREKLLPTT
ALSGRPVNNVYGLIDRDFIEPNLMKSTYVVKTSSLTLDLLQKNPQLLTGKIANVFFGTGNLKQGWYRSLSSMSNGTERGG
TAFRVAGGMKAYEEAFAITGNLIIPVYDPQGTGISGQDPCKPRVVGETDRQVFCLPYGACLKTDGTIDNGTEAKTGFQTK
TKDCPPGIAECNDNVIGTGIRGLAMAPITSSTANSACPDKTLAGNEKGTGKWSCQQIINPTRWYDKWLK

Nucleotide


Download         Length: 3810 bp        

>NTDB_id=926638 VJ143_RS01745 WP_412676229.1 366913..370722(+) (pilY1) [Acinetobacter guillouiae strain 13-3]
ATGAAAATGAAAAAACAGAAAAATTGGCTCATTCCTAAATTGAAGTATACTCAGTTGAGTCGTGGTATCTCATTTGCTGC
TGGATTTGTGGGGACAACGTTAATCGCATCTTCGGTAGTGCAAGCAAGTGATTTACAGATTTATGCCACCCCCACAGCAG
GTAAGAAAACCATTGTGATGATGTTGGACACTTCTGGAAGTATGGATGGTACCGACTCAGGTCAAACAGGGAAAAGGATT
ACACGATTACAGAATGGTATGTATAATTTTCTTGACAGTCCTAACCCAATTTTTAAAGATGTAAGTGTTGGTTTAGGGCG
CTTTTTTTATAGCTCTGGTGATGGTGGGAGGATGTTGGTAGAAGCACAGCCCTTAGGTGAAGTTGGTTCTGCTCAACGTG
TAGCATTGAGAAATGCGGTAAAAAATTTATCAGCAACAGATTGGACACCATCATCGCATGCTTATGCTGAAGCAGCGGCA
TATTTAATGGGAACGTCAACATTAAGTAAGGTTACTTTGGATGCTGGAACTAATATAGTTCCTGTATATTTCCAAAGAAG
TGGTAGTAATGGTGCTTGGTATTATTGTGATGGATTGAATAATTTAAAGAATGATTGTGCATCTTGGTCATCATTAAGTG
CTGCGCCGTCATCTGCTGACAGAGGCAATAACACAATTTCTTGTAATGTTTATGTGCCAACTCTGAGAGGTGGTACATGT
TATAGAAAAACAGGCAAAATTATAATAACTCAACCGAATTTGGATAGTGGATTCAGCCTTGCTGATAATAGCACTATAGA
TTCTTCTGATACTTCAAGATATAAATCTCCTCTACCTGAGGTGGATAAACGTGTTAGCTGTGATGGTCAAGGGATTTATT
TTCTTTCAGATGGTGCAGCAAATAGAACCTCAAGTGCTCGTTCTACAGCATTAATGTCAGCAGCTTTAGAAGGTTACGGC
GCTACTTTTAATTGTAGTGGTGGTTTAACTGGTGGGGGGAGCGATTCTGGTTGGGATTGCATGGGTGAGTTTGCTAAAAA
ACTTTATAATAAAGATACAAATCCTTCAGGAGTTTCTATTCAGACTGCATTTGTTGGTTTTGGTAATGAAATGAATAACT
TAGCTAATGTATATGTACAAAATGCCTGTAAGTTAAGTTCACGTACACAAGCGGATCGTACTGGTGATGATGCCTGCTCG
CCTGGAAGTGGTTATTATTCAGTTACATCACCAGGCTACGGTAATGGAGGATTTTTTACCACTCAGTCAGCTCAAGGGGT
GACGGATAGTGTTGTTGCCTTTATCAATAATCTTGGTAAAGCTCCACTTGAACCCTTAACTACAGGTGCGATATCTGTCC
CTGTTGATAATTTAAATCCCTCTGGATTACAACCTTATGGCTATTTGCGAGGACTTGAGCCTAATCCTCAGGCTTCAGAT
TTAATTTGGGTTGGAAATTTAAAAAAATATCAAGTTATTCAGACTGGTAGTAATGCAGGTGCATTCGCCGCAGCTGGGTC
AAAACTTGTTTATGATAGTCAGGGTGGCTTCAATAGTGGAACGCGTGACTTGTGGAACAATTCAACAGTATACAATGGTA
AAGTCTATAATGATGGTGGTGTAATTCGACTAGGTGGTGCTTACTCAAAAGTTCCTATGCCGATACTCGGTCAAACAGAA
AATCTTGCTGCTGATCCACCTCAATATGCATATGCTGCAAATCCAAATGCTTTACGTAACTTATTTACAGACGTTAAAGC
GACAGGTGGAGCTAATCTTACAAATACAGGTAATAACACAAGTCTCATTAAAGTTCCTGAGGGAAATTTACCTACAAGTG
GTATTTCTGCATATGTATTAGGCCAGTTTAAGAATCAAGCAACTTTAAAAGATTTTCCACTTTTAACCAAGATAAAGCTA
CTAAACTATCTTGGTTTTAGTGTGCCATATGATGAAACCGCTACAGCATTGCCGACCACATTGCAAACGTCAAATGCGCC
ATTTTTAGCAATGGGAGGAAGTATTCATTCACTTCCTGTACAATTGACATATTCAGGGACATTAGATGAAAAAGGCAATT
TAACCTCTACTCGTAGTCAATCTGTTCTATATGGCACGATGGATGGTGGTTTACATATTGTAGATAGTTCGACTGGTGCA
GAGCAAATGGTATTTGTTCCTGCTGAACTTTTGAGAAGTAGCCTAGGTTCAAAAGCTTTAATTAAAGGGCAGACAGATAC
AGATGCTCCAGTATCAGGAACAGATGGCGCTTGGATATCAGATTCAACCTATAAAACTCAACGAGGTACAGGTTCAGATT
CCAGTACAGTAAAAGCATTGTCTATGAATATTTATGGCGGTATGCGCATGGGTGGGAGCAGTTACTATGCTCTAGATGTT
TTAAATCCATCTTCCCCTAAGTTGAAGTTTAGACTTGGTGCAGATGTTTCAGGATTTGAGCGTATAGGTCAGTCTTGGTC
TAAGCCAGTACTTGCAAATGTAAGATTTAATGGTGTGAATAAACGCGTCATGATTGTGGGAGGGGGCTATGACCAATGCT
ATGAAAACCCACAATTTGAATTGGGTAAAACAGTGTCTAACACAGATTTTCCTGATACAACATGCAATAACAAAGCTCAA
GCTCAGGGTAATGCAGTATATATGGTTGATGCAGATAATGGCTCATTAATCTGGTCTGCAACTTATGGGGCATCTACAGC
TGATGCAGATAAAAAATATTTAAAGCATAGCATTGTTAGCCGCATAAGTGCGATTGATCGTGATGGCGATGGGTTGGTAG
ATAATCTATATTTTGCTGATTTAGGTGGACAAGTTTTCCGTGCTGATTTAGATAATTATCAAACGAAATCGGGATCAAAT
TATAGTAGTTTTGGTGTGAGGGTTAGTCGTATTGCCAATCTAGCAAGCAATGATACGATTAATAGTAAATCTTGGGACTA
TACGGGGAGTAAAGCACCAAGATTCTATGAAGCGCCAACTTTAACAATTCATGATGAGGGCGCGAATACCTTTCTTCTTG
TTGGTTTAGCATCAGGGAATCGAAGCACTCCACTTGATGTTGTTCCAACAGTTGGAAGAGAAAAATTATTACCAACGACT
GCATTATCAGGTCGTCCTGTAAATAACGTATATGGCTTAATCGATAGAGATTTTATCGAACCAAATTTAATGAAATCTAC
ATATGTCGTTAAAACTAGTAGCTTAACCCTAGATTTGTTGCAAAAAAATCCCCAGTTACTGACTGGAAAGATTGCAAACG
TTTTTTTTGGAACAGGTAATCTAAAACAAGGATGGTATCGTTCGTTATCAAGTATGAGTAATGGTACAGAACGAGGTGGT
ACAGCTTTCCGTGTTGCTGGAGGAATGAAGGCATATGAGGAGGCATTTGCTATCACAGGTAATTTAATTATTCCTGTTTA
TGATCCTCAAGGTACTGGTATTTCTGGGCAAGATCCATGTAAACCTCGTGTGGTTGGTGAAACTGACCGCCAAGTGTTTT
GTTTACCGTATGGTGCATGTTTAAAAACAGATGGCACAATTGATAATGGTACAGAAGCTAAAACTGGATTCCAGACAAAG
ACAAAAGATTGTCCTCCAGGTATAGCTGAGTGTAATGATAATGTTATAGGTACTGGTATTCGAGGTCTAGCAATGGCACC
GATTACAAGTTCTACAGCAAATAGTGCTTGTCCTGATAAAACATTAGCAGGCAATGAAAAAGGGACTGGAAAATGGTCTT
GTCAGCAAATTATTAACCCAACAAGATGGTATGATAAATGGCTCAAATAA

Domains

Predicted by InterproScan.

Neisseria PilC beta-propeller domain (T4P_PilY1)

(667-951)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY1 Acinetobacter baumannii D1279779

56.058

100

0.576