Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   VJ143_RS01735 Genome accession   NZ_CP142740
Coordinates   365093..366076 (+) Length   327 a.a.
NCBI ID   WP_327858034.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 360093..371076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS01710 (VJ143_01710) rpoZ 361784..362065 (-) 282 WP_004718302.1 DNA-directed RNA polymerase subunit omega -
  VJ143_RS01715 (VJ143_01715) gmk 362187..362807 (-) 621 WP_034617459.1 guanylate kinase -
  VJ143_RS01720 (VJ143_01720) ispH 362942..363892 (+) 951 WP_004718298.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  VJ143_RS01725 (VJ143_01725) - 364035..364535 (+) 501 WP_224964620.1 GspH/FimT family pseudopilin -
  VJ143_RS01730 (VJ143_01730) pilV 364536..365084 (+) 549 WP_327858033.1 type IV pilus modification protein PilV Machinery gene
  VJ143_RS01735 (VJ143_01735) pilW 365093..366076 (+) 984 WP_327858034.1 PilW family protein Machinery gene
  VJ143_RS01740 (VJ143_01740) - 366145..366903 (+) 759 WP_412676228.1 hypothetical protein -
  VJ143_RS01745 (VJ143_01745) pilY1 366913..370722 (+) 3810 WP_412676229.1 pilus assembly protein PilY Machinery gene

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 35580.20 Da        Isoelectric Point: 7.1349

>NTDB_id=926637 VJ143_RS01735 WP_327858034.1 365093..366076(+) (pilW) [Acinetobacter guillouiae strain 13-3]
MSYFIINKGFTLLELIVSLAIGLIIAAAAMQLFMGGFLTSRMQEANSELQNSGVFGLDYMVRDIRLANFGNTRPDLNDQT
PRGGIVLTARDATNTNTNITYPASAPFMSNGLLSHSKGNQEDVSGVKNEWQGLSNVNQTSDQLTIQFVSPNEMVNCEGEN
VQEGDYVIQRYFLRRDPADATSGNNFALACDANTPTASGTTPVANPTTISGFGGAGQVIMPRVDHFIVQLGVRDSNNRLA
YYSINQYRAEANKARAKVPAIEPPRIISVKMAVLVRSLDDTKNKNIDLTKSIAVLNQDVTLNDSTTLYARRVYSTTVAIR
NGLGVPK

Nucleotide


Download         Length: 984 bp        

>NTDB_id=926637 VJ143_RS01735 WP_327858034.1 365093..366076(+) (pilW) [Acinetobacter guillouiae strain 13-3]
ATGAGTTATTTTATTATAAATAAAGGGTTTACTCTTTTGGAGTTGATTGTTTCTCTGGCCATTGGATTGATCATTGCCGC
AGCTGCGATGCAACTTTTTATGGGTGGGTTTTTAACTTCAAGAATGCAAGAGGCCAATTCAGAGTTACAAAATAGTGGTG
TATTTGGCTTAGATTATATGGTGCGAGATATTCGCCTAGCTAATTTTGGTAATACTCGTCCCGATTTGAATGATCAAACA
CCACGGGGTGGTATCGTTTTAACTGCAAGAGATGCAACAAATACAAATACAAATATCACATACCCAGCCTCAGCACCATT
TATGTCTAATGGATTATTAAGTCATAGCAAAGGTAATCAAGAGGACGTCAGTGGTGTTAAAAATGAATGGCAAGGTCTAT
CTAATGTAAATCAGACCAGTGATCAGTTAACGATTCAATTCGTTTCACCAAATGAAATGGTGAATTGTGAAGGGGAGAAT
GTTCAAGAGGGGGACTACGTCATTCAACGCTATTTTTTAAGACGAGATCCAGCTGATGCTACTTCTGGAAATAATTTTGC
TTTGGCTTGTGATGCAAATACCCCAACCGCATCTGGAACAACTCCTGTAGCAAATCCTACTACAATTTCAGGTTTTGGTG
GTGCAGGGCAGGTGATTATGCCTCGAGTTGACCATTTCATTGTGCAATTAGGTGTAAGAGATAGTAATAATCGCCTTGCA
TATTATTCAATTAATCAATATAGAGCTGAAGCCAATAAGGCAAGAGCAAAAGTACCAGCCATTGAACCTCCAAGGATTAT
TTCGGTAAAAATGGCAGTATTGGTACGCTCACTTGATGATACTAAAAATAAAAATATTGATTTAACGAAATCTATCGCAG
TTTTAAATCAAGACGTAACATTAAATGATTCGACGACTTTATATGCACGTCGCGTCTACTCAACTACTGTTGCAATCCGT
AATGGTCTAGGAGTTCCTAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)

Type IV Pilus-assembly protein W (PilW)

(209-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

51.351

100

0.523