Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   VJ143_RS01730 Genome accession   NZ_CP142740
Coordinates   364536..365084 (+) Length   182 a.a.
NCBI ID   WP_327858033.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 359536..370084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS01710 (VJ143_01710) rpoZ 361784..362065 (-) 282 WP_004718302.1 DNA-directed RNA polymerase subunit omega -
  VJ143_RS01715 (VJ143_01715) gmk 362187..362807 (-) 621 WP_034617459.1 guanylate kinase -
  VJ143_RS01720 (VJ143_01720) ispH 362942..363892 (+) 951 WP_004718298.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  VJ143_RS01725 (VJ143_01725) - 364035..364535 (+) 501 WP_224964620.1 GspH/FimT family pseudopilin -
  VJ143_RS01730 (VJ143_01730) pilV 364536..365084 (+) 549 WP_327858033.1 type IV pilus modification protein PilV Machinery gene
  VJ143_RS01735 (VJ143_01735) pilW 365093..366076 (+) 984 WP_327858034.1 PilW family protein Machinery gene
  VJ143_RS01740 (VJ143_01740) - 366145..366903 (+) 759 WP_412676228.1 hypothetical protein -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19405.45 Da        Isoelectric Point: 5.1026

>NTDB_id=926636 VJ143_RS01730 WP_327858033.1 364536..365084(+) (pilV) [Acinetobacter guillouiae strain 13-3]
MIIITNQKGVSLMEALVALLLLAIGVLGYSALQLRAIDASSEALYRSQGMLILRGLADNIRANPLGQSSYPTAVRGYTSI
KTAPTAPTVNCYNATEAQRCTPAQMATYDAYLAEKTAFEIGMHITMDDCPGVSVAPVKRQCLFIAWDDTTLTATATTANI
SNCMSDAGVYVAGSKCLMMEAY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=926636 VJ143_RS01730 WP_327858033.1 364536..365084(+) (pilV) [Acinetobacter guillouiae strain 13-3]
ATGATAATAATAACGAATCAAAAAGGTGTCAGTTTAATGGAAGCTCTAGTTGCTCTTTTGCTTTTAGCAATAGGAGTACT
TGGATATTCAGCATTGCAATTAAGGGCGATAGATGCATCTTCAGAAGCATTATATCGTTCGCAAGGCATGTTAATTCTGC
GTGGACTTGCAGACAATATTCGTGCAAATCCACTGGGCCAAAGCAGTTATCCTACAGCTGTACGAGGTTATACCTCAATA
AAAACAGCACCTACAGCTCCAACTGTGAATTGTTACAATGCAACAGAAGCACAAAGATGCACGCCAGCTCAGATGGCAAC
TTATGATGCTTATCTGGCTGAAAAAACGGCATTTGAAATAGGTATGCATATTACGATGGATGATTGCCCGGGTGTATCTG
TAGCACCAGTGAAAAGACAATGTTTATTTATTGCTTGGGACGATACAACTCTAACGGCTACAGCGACTACAGCAAATATA
AGTAATTGTATGTCTGATGCTGGCGTTTACGTCGCTGGTTCAAAATGCCTCATGATGGAGGCATATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(6-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

54.696

99.451

0.544