Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   VJ143_RS01445 Genome accession   NZ_CP142740
Coordinates   307932..309347 (-) Length   471 a.a.
NCBI ID   WP_105714623.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 302932..314347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS01430 (VJ143_01430) lptG 303665..304735 (+) 1071 WP_151956266.1 LPS export ABC transporter permease LptG -
  VJ143_RS01435 (VJ143_01435) gpmI 304890..306437 (+) 1548 WP_262084851.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  VJ143_RS01440 (VJ143_01440) - 306473..307651 (+) 1179 WP_327858015.1 S41 family peptidase -
  VJ143_RS01445 (VJ143_01445) pilR 307932..309347 (-) 1416 WP_105714623.1 sigma-54-dependent transcriptional regulator Regulator
  VJ143_RS01450 (VJ143_01450) pilS 309365..310933 (-) 1569 WP_327858016.1 sensor histidine kinase Regulator
  VJ143_RS01455 (VJ143_01455) - 310970..311605 (-) 636 WP_004718392.1 response regulator -
  VJ143_RS01460 (VJ143_01460) pbpG 311838..312893 (+) 1056 WP_004718389.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  VJ143_RS01465 (VJ143_01465) thrC 313182..314321 (-) 1140 WP_004718388.1 threonine synthase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 53376.52 Da        Isoelectric Point: 6.5046

>NTDB_id=926630 VJ143_RS01445 WP_105714623.1 307932..309347(-) (pilR) [Acinetobacter guillouiae strain 13-3]
MTTRQPLVLLVDDEQDLCMLMQMSLSRMGIKTHMAHHLQQAKYFFSEYKYDACITDLNLPDGSGLDLVKHVSQHYPKTPI
AVLTAYGNMEIAIASLKAGAFDFVSKPINQLHLQQLLQKALHVPQLRETISDAPLEESMLIGDSQVIRKLRESIKKIARS
QAPVFITGESGTGKEVVANLIHLLSNRSDSPFVAINCGAISEELMESELFGHKKGCFSGATQDKQGLIQAANGGTLFLDE
IAELSLAMQAKLLRALQEKKIRPLGSDTEIEVDFRIISATHQDIEAFVEQGKFRHDLFFRIHVMDIVLPPLRERDCDILI
LANHFLQQICTEWRISTKSFTEQAKAFLLQQHYSGNVRELRNIIEKAITMSDEDYIDIQQLQPAPHRGIHKVEQHDLMQS
KALPIVMPNKAQNIPEEGLEQYLEKVEKEVLLSALNQTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTDDDE

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=926630 VJ143_RS01445 WP_105714623.1 307932..309347(-) (pilR) [Acinetobacter guillouiae strain 13-3]
ATGACTACACGACAACCATTGGTTTTACTTGTAGATGATGAACAAGATTTATGTATGTTAATGCAAATGAGCCTTTCTCG
GATGGGCATCAAAACGCATATGGCACACCATTTACAACAAGCCAAATATTTTTTTAGTGAATATAAATATGATGCCTGTA
TTACCGATTTAAACCTCCCTGATGGCAGTGGTTTAGATTTGGTTAAGCATGTATCACAGCATTATCCTAAAACGCCTATT
GCAGTCTTAACTGCATATGGAAATATGGAAATTGCGATTGCCTCGCTGAAAGCAGGTGCTTTTGATTTTGTCAGCAAACC
GATTAACCAATTACATCTGCAACAGCTTTTACAAAAAGCTTTGCATGTACCACAGTTAAGAGAAACTATCAGCGATGCGC
CGCTTGAGGAATCAATGCTCATCGGTGATTCACAGGTCATTCGTAAGTTAAGAGAATCGATTAAAAAAATTGCTCGTTCA
CAGGCACCTGTGTTTATCACTGGTGAATCTGGAACAGGTAAAGAAGTTGTTGCCAATCTCATCCATCTACTCAGCAACCG
CAGTGATAGCCCTTTTGTTGCGATTAATTGTGGTGCAATTTCTGAAGAGTTGATGGAGAGTGAGCTATTTGGGCATAAAA
AAGGCTGTTTTTCAGGTGCAACTCAAGACAAACAGGGCCTTATTCAAGCTGCCAATGGTGGCACCCTGTTTTTAGATGAA
ATTGCAGAACTTTCTTTGGCCATGCAAGCCAAACTGTTACGAGCTTTACAAGAAAAGAAAATTCGTCCTCTAGGCAGTGA
TACCGAAATCGAAGTTGATTTTCGTATTATCAGTGCAACACATCAAGATATTGAAGCATTCGTTGAACAAGGCAAATTCC
GTCATGATCTGTTCTTTAGAATTCATGTGATGGATATTGTGCTCCCGCCATTGCGCGAACGTGATTGTGATATTTTGATT
TTAGCCAATCATTTTCTTCAGCAAATTTGTACAGAATGGCGTATTTCAACCAAGTCATTCACTGAACAAGCCAAAGCTTT
TCTTTTGCAACAACATTACTCAGGCAATGTTCGTGAATTACGCAATATCATCGAAAAAGCCATTACCATGAGTGATGAAG
ACTATATTGATATTCAACAGCTACAACCTGCTCCGCATCGTGGTATCCACAAAGTCGAACAGCATGATCTGATGCAAAGT
AAAGCCTTGCCTATCGTTATGCCGAATAAAGCACAAAACATTCCAGAAGAAGGTTTGGAGCAATATTTGGAAAAAGTCGA
AAAAGAGGTGCTGTTATCTGCATTAAATCAAACCCATTGGAATCGTACTTTAGCTGCTAAGAAATTGGGCATGACGTTTC
GTTCTTTACGCTACCGTTTGAAAAAGTTTGGTTTAGATACCGATGATGATGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

69.002

100

0.69
  pilR Pseudomonas aeruginosa PAK

47.835

98.089

0.469