Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   VJ143_RS01450 Genome accession   NZ_CP142740
Coordinates   309365..310933 (-) Length   522 a.a.
NCBI ID   WP_327858016.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 304365..315933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS01435 (VJ143_01435) gpmI 304890..306437 (+) 1548 WP_262084851.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  VJ143_RS01440 (VJ143_01440) - 306473..307651 (+) 1179 WP_327858015.1 S41 family peptidase -
  VJ143_RS01445 (VJ143_01445) pilR 307932..309347 (-) 1416 WP_105714623.1 sigma-54-dependent transcriptional regulator Regulator
  VJ143_RS01450 (VJ143_01450) pilS 309365..310933 (-) 1569 WP_327858016.1 sensor histidine kinase Regulator
  VJ143_RS01455 (VJ143_01455) - 310970..311605 (-) 636 WP_004718392.1 response regulator -
  VJ143_RS01460 (VJ143_01460) pbpG 311838..312893 (+) 1056 WP_004718389.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  VJ143_RS01465 (VJ143_01465) thrC 313182..314321 (-) 1140 WP_004718388.1 threonine synthase -
  VJ143_RS01470 (VJ143_01470) - 314457..315761 (-) 1305 WP_004718385.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59621.29 Da        Isoelectric Point: 6.2305

>NTDB_id=926631 VJ143_RS01450 WP_327858016.1 309365..310933(-) (pilS) [Acinetobacter guillouiae strain 13-3]
MSPTVTVPIYQTIYRLGTLYSGYRLVIAFCLVIIFLITLEHQPVHYEYPSLYFYSLTAFTLIAALQMMLLKFYPHGVGRQ
FIGFFIVDIPFLSTLVFALNGPNLAISILFVIAVFTANFLLSKNKALFVTLVSVIAIIYQQFLGSFFDFSNLNNISNSAL
LAFLFFMVYGIGQIAINRFQVLESLNTYQSLELFKLQNINRYILEQIEVGYLVLDEKCKIIVSNPAACLLLGISPLYAHE
QYHLSSFQPDLYEILKDALLRDGERFQFESQQSSYTVDIRVQKLIVPYQALTLLVLEDAQKINQKVQQLKLAALGQLSAS
IAHEIRNPLAAIAQANDLFISSDPEQQIILNQMITKQTIRINNIIKDTLDMAKNKKIHTSKINFQEFVDDLLRHDLGDAQ
EKIKLEIQADVWIYFDDSHLRQVLINLVRNALRHNDQNAEHILVQTFKNESHVYIDVIDYGKGVTKQDLSQLFQPFFSTE
INGTGLGLYLSQTICEANQAKLIYVEQKQQGACFRIECPLMD

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=926631 VJ143_RS01450 WP_327858016.1 309365..310933(-) (pilS) [Acinetobacter guillouiae strain 13-3]
ATGTCGCCTACGGTAACGGTTCCTATTTATCAAACAATTTACCGTCTAGGCACACTGTATTCAGGGTATAGATTGGTTAT
TGCCTTTTGCTTAGTCATTATTTTTCTGATTACCCTTGAACATCAGCCCGTACATTACGAATATCCCAGCTTATATTTTT
ATTCTCTAACCGCATTTACGCTGATCGCAGCATTACAAATGATGCTGCTCAAGTTCTATCCGCATGGGGTTGGGCGGCAA
TTTATCGGTTTTTTTATTGTTGATATTCCCTTTCTAAGTACCTTGGTATTTGCCCTCAATGGGCCAAATTTAGCCATCAG
TATTTTGTTCGTGATTGCCGTTTTTACCGCGAATTTTCTGCTTAGTAAAAATAAAGCGCTATTCGTAACACTGGTTTCTG
TGATTGCAATTATTTACCAACAGTTTTTAGGCAGCTTCTTCGATTTTTCAAATTTAAATAATATTAGTAACAGTGCCTTA
TTGGCTTTTTTATTTTTTATGGTCTATGGCATTGGACAGATTGCAATTAATCGCTTCCAAGTTTTAGAGTCGTTAAATAC
CTATCAATCTCTTGAATTATTTAAGTTACAGAACATTAACCGCTATATTTTAGAACAGATTGAAGTCGGTTATTTGGTGC
TTGATGAAAAATGCAAAATTATCGTCAGTAACCCTGCTGCCTGTTTACTTTTGGGCATTTCACCGCTTTACGCACATGAG
CAATATCATTTATCCAGCTTTCAACCGGACTTATATGAAATCTTAAAAGATGCCTTGTTACGTGATGGCGAACGCTTCCA
ATTTGAATCCCAACAGTCCTCGTATACAGTCGATATTCGCGTACAAAAATTGATTGTTCCGTATCAAGCACTCACGCTTT
TAGTCCTCGAAGATGCACAAAAAATTAATCAAAAGGTACAACAACTCAAACTTGCCGCACTTGGTCAATTATCGGCCAGT
ATTGCCCATGAAATTCGCAATCCACTTGCTGCCATTGCGCAGGCCAATGATCTCTTTATCAGCAGCGATCCAGAACAACA
AATCATTTTAAATCAAATGATTACCAAACAAACCATCCGTATCAATAATATTATTAAAGATACCTTAGATATGGCAAAAA
ATAAAAAGATCCATACCTCAAAAATTAATTTTCAAGAATTTGTTGATGACTTATTACGCCATGATTTAGGGGATGCTCAG
GAAAAAATCAAATTAGAAATTCAAGCTGATGTTTGGATCTATTTTGATGACTCCCACCTCCGACAAGTTTTAATCAATTT
AGTGCGTAATGCATTACGTCATAATGATCAAAATGCTGAGCACATTTTAGTACAAACGTTTAAAAATGAATCACATGTAT
ATATCGATGTGATTGATTATGGGAAAGGCGTCACAAAACAAGATCTTTCGCAATTATTTCAGCCATTTTTTAGTACCGAA
ATCAATGGAACTGGTTTAGGATTGTACCTATCGCAGACGATATGCGAAGCGAATCAAGCGAAACTAATTTACGTAGAGCA
AAAACAACAAGGGGCGTGCTTCCGTATCGAATGCCCACTCATGGATTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

58.398

98.084

0.573