Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   OX462_RS04095 Genome accession   NZ_CP142524
Coordinates   908235..909314 (+) Length   359 a.a.
NCBI ID   WP_409027842.1    Uniprot ID   -
Organism   Janthinobacterium sp. SUN098     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 903235..914314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OX462_RS04075 (OX462_04075) - 905131..906120 (+) 990 WP_409027840.1 ABC transporter substrate-binding protein -
  OX462_RS04080 (OX462_04080) - 906189..906797 (-) 609 WP_409027841.1 hypothetical protein -
  OX462_RS04085 (OX462_04085) - 907061..907864 (+) 804 WP_070288603.1 inner membrane protein YpjD -
  OX462_RS04090 (OX462_04090) - 907861..908115 (+) 255 WP_070218586.1 PP0621 family protein -
  OX462_RS04095 (OX462_04095) pilR 908235..909314 (+) 1080 WP_409027842.1 sigma 54-interacting transcriptional regulator Regulator
  OX462_RS04100 (OX462_04100) ampD 909292..909903 (+) 612 WP_070310136.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OX462_RS04105 (OX462_04105) - 910295..913246 (+) 2952 WP_070218583.1 ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38694.02 Da        Isoelectric Point: 9.4826

>NTDB_id=926040 OX462_RS04095 WP_409027842.1 908235..909314(+) (pilR) [Janthinobacterium sp. SUN098]
MSSPRTSQQTVTTAGMPPAPQLSGNSLPMQALRAQISRIARCGAPVAIRGESGTGKELAARAIHAQGARAGFPFIAVNCG
AIPEALMEAEFFGCRPGAYTGALHERQGLFQAAHGGSLLLDEVDDLPLAMQVKLLRVLQERRVRKLGGSADEAVDVRILC
ASQHGLARGVAAGTFRQDLFYRLNVIELALPPLRERRGDLQVLCEVILARLSPRRAVSLAPPVLAALAAYAFPGNVRELE
NVLERALAFADGGVIALDGLALPSAPGSMPLRAAPALPDLPERQLCLPGMAAYGVGPVLPLDVYLRQAERDMIMQALVQA
RYHRARAARQLGLSVRQLRYRMQKLTIQEALLDERMDDR

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=926040 OX462_RS04095 WP_409027842.1 908235..909314(+) (pilR) [Janthinobacterium sp. SUN098]
ATGTCCAGTCCCCGCACCAGCCAGCAGACCGTGACCACCGCCGGCATGCCGCCGGCGCCGCAACTGAGCGGTAATTCCTT
GCCCATGCAGGCGCTGCGCGCGCAGATAAGCCGCATCGCCCGCTGCGGCGCGCCGGTGGCCATCCGCGGCGAATCAGGCA
CGGGCAAGGAACTGGCGGCGCGCGCCATCCATGCGCAGGGCGCGCGCGCCGGCTTCCCGTTTATCGCCGTCAACTGCGGC
GCCATACCCGAAGCGCTGATGGAAGCGGAATTCTTCGGCTGCCGCCCGGGCGCCTACACGGGCGCGCTGCACGAGCGCCA
GGGCTTGTTCCAGGCGGCCCATGGCGGCAGCCTGCTGCTCGACGAAGTCGACGACCTGCCGCTGGCCATGCAGGTGAAAC
TGTTGCGCGTGCTGCAGGAGCGCCGCGTGCGCAAGCTGGGCGGCAGTGCCGACGAAGCCGTCGACGTGCGCATCCTGTGC
GCCAGCCAGCATGGCCTGGCGCGCGGCGTGGCCGCCGGCACCTTTCGCCAGGATCTGTTTTACCGCCTCAATGTGATCGA
ACTGGCGCTGCCGCCGCTGCGCGAACGGCGCGGCGATCTGCAGGTATTATGTGAGGTGATCCTGGCGCGCCTGTCGCCAC
GCCGGGCCGTGAGCCTGGCGCCGCCCGTGCTGGCGGCCCTGGCCGCGTATGCGTTTCCCGGTAATGTGCGCGAACTGGAA
AACGTGCTGGAGCGGGCGCTGGCCTTTGCCGACGGCGGCGTGATCGCGCTCGACGGGCTGGCCTTGCCATCCGCGCCGGG
CAGCATGCCGTTGCGGGCGGCGCCGGCATTGCCGGACTTGCCGGAACGGCAACTGTGCCTGCCCGGCATGGCGGCATATG
GCGTGGGCCCGGTCCTGCCGCTGGACGTGTATTTGCGTCAGGCCGAGCGCGACATGATCATGCAGGCGCTGGTCCAGGCG
CGTTATCACCGCGCGCGGGCGGCGCGCCAGCTGGGCCTGAGTGTGCGCCAGCTGCGTTACCGCATGCAGAAATTGACGAT
ACAGGAAGCCTTACTTGATGAGCGGATGGACGATAGATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(23-188)

Bacterial regulatory protein, Fis family (HTH_8)

(305-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

52.096

93.036

0.485
  pilR Acinetobacter baumannii strain A118

42.69

95.265

0.407
  luxO Vibrio cholerae strain A1552

39.877

90.808

0.362