Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VUQ07_RS05405 Genome accession   NZ_CP142436
Coordinates   1143041..1143556 (-) Length   171 a.a.
NCBI ID   WP_347297779.1    Uniprot ID   A0AB74U2S5
Organism   Dolosigranulum savutiense strain MSK211     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1138041..1148556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ07_RS05385 (VUQ07_05385) dnaB 1138601..1139992 (-) 1392 WP_347297782.1 replicative DNA helicase -
  VUQ07_RS05390 (VUQ07_05390) rplI 1140171..1140623 (-) 453 WP_347297781.1 50S ribosomal protein L9 -
  VUQ07_RS05395 (VUQ07_05395) - 1140639..1142630 (-) 1992 WP_347297780.1 DHH family phosphoesterase -
  VUQ07_RS05400 (VUQ07_05400) rpsR 1142780..1143019 (-) 240 WP_111949546.1 30S ribosomal protein S18 -
  VUQ07_RS05405 (VUQ07_05405) ssb 1143041..1143556 (-) 516 WP_347297779.1 single-stranded DNA-binding protein Machinery gene
  VUQ07_RS05410 (VUQ07_05410) rpsF 1143611..1143910 (-) 300 WP_347297778.1 30S ribosomal protein S6 -
  VUQ07_RS05415 (VUQ07_05415) nox 1144227..1145564 (+) 1338 WP_347297777.1 H2O-forming NADH oxidase -
  VUQ07_RS05420 (VUQ07_05420) purB 1145826..1147124 (+) 1299 WP_347297776.1 adenylosuccinate lyase -
  VUQ07_RS05425 (VUQ07_05425) - 1147213..1147950 (-) 738 WP_347297775.1 TraX family protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19289.62 Da        Isoelectric Point: 4.3017

>NTDB_id=925985 VUQ07_RS05405 WP_347297779.1 1143041..1143556(-) (ssb) [Dolosigranulum savutiense strain MSK211]
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTNKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGGFNNNQSFNQSRNNQSQNQNSFNSNNNFDNDPFDTSNND
DIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=925985 VUQ07_RS05405 WP_347297779.1 1143041..1143556(-) (ssb) [Dolosigranulum savutiense strain MSK211]
TTGATTAATAATGTTACGCTAGTGGGTAGGTTAACGCGAGATCCTGAATTGAGATATACTGGGAATGGAACAGCCGTCGT
ATCTTTTACAATCGCAGCTGATCGCCCGTTTACTAATAGTCAGGGTGAACGCGAAGCTGATTTTATTAATTGTGTTGCGT
GGAGAAGAACAGCGGAAGTTGTTTCTAATTACACAAACAAGGGTTCATTAGTTGGTGTAACTGGTCGTATTCAAACACGC
AGTTACGAAAATAATGAAGGTCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAATCGTCGATCAAATGATGACTACAGTAATGGTGGTTTTAATAATAACCAATCATTTAATCAGTCCCGAA
ACAATCAATCTCAGAACCAGAATAGCTTCAACTCAAATAATAATTTTGACAATGATCCATTCGATACAAGCAATAATGAT
GATATCGATATCTCAGATGATGATTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

52.247

100

0.544
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.988

0.368