Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   VUQ08_RS05280 Genome accession   NZ_CP142433
Coordinates   1133583..1134098 (-) Length   171 a.a.
NCBI ID   WP_347299857.1    Uniprot ID   A0AB74TQU8
Organism   Dolosigranulum savutiense strain MSK433     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1128583..1139098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VUQ08_RS05260 (VUQ08_05265) dnaB 1129143..1130534 (-) 1392 WP_347299854.1 replicative DNA helicase -
  VUQ08_RS05265 (VUQ08_05270) rplI 1130713..1131165 (-) 453 WP_347299855.1 50S ribosomal protein L9 -
  VUQ08_RS05270 (VUQ08_05275) - 1131181..1133172 (-) 1992 WP_347299856.1 DHH family phosphoesterase -
  VUQ08_RS05275 (VUQ08_05280) rpsR 1133322..1133561 (-) 240 WP_111949546.1 30S ribosomal protein S18 -
  VUQ08_RS05280 (VUQ08_05285) ssb 1133583..1134098 (-) 516 WP_347299857.1 single-stranded DNA-binding protein Machinery gene
  VUQ08_RS05285 (VUQ08_05290) rpsF 1134153..1134452 (-) 300 WP_347297778.1 30S ribosomal protein S6 -
  VUQ08_RS05290 (VUQ08_05295) - 1134672..1135778 (-) 1107 WP_347299858.1 IS30 family transposase -
  VUQ08_RS05295 (VUQ08_05300) nox 1136067..1137404 (+) 1338 WP_347297777.1 H2O-forming NADH oxidase -
  VUQ08_RS05300 (VUQ08_05305) purB 1137665..1138963 (+) 1299 WP_347299859.1 adenylosuccinate lyase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19388.75 Da        Isoelectric Point: 4.3857

>NTDB_id=925913 VUQ08_RS05280 WP_347299857.1 1133583..1134098(-) (ssb) [Dolosigranulum savutiense strain MSK433]
MINNVTLVGRLTRDPELRYTGNGTAVVSFTIAADRPFTNSQGEREADFINCVAWRRTAEVVSNYTNKGSLVGVTGRIQTR
SYENNEGRTVYVTEVVVENFRMLESKATAENRRSNDDYSNGRFNNNQSFNQSRNNQSQNQNSFNSNNNFDNDPFDTSNND
DIDISDDDLPF

Nucleotide


Download         Length: 516 bp        

>NTDB_id=925913 VUQ08_RS05280 WP_347299857.1 1133583..1134098(-) (ssb) [Dolosigranulum savutiense strain MSK433]
TTGATTAATAATGTTACGCTAGTAGGTAGGTTAACGCGAGATCCTGAATTGAGATATACTGGGAATGGAACAGCCGTCGT
ATCTTTTACAATCGCAGCTGATCGCCCGTTTACTAATAGTCAGGGTGAGCGCGAAGCTGATTTTATTAATTGTGTTGCGT
GGAGAAGAACAGCGGAAGTTGTTTCTAATTACACAAACAAGGGTTCATTAGTTGGTGTAACTGGTCGTATTCAAACACGC
AGTTACGAAAATAATGAAGGTCGAACAGTTTATGTGACAGAAGTTGTGGTTGAGAACTTTAGAATGTTAGAATCAAAAGC
AACTGCTGAAAACCGTCGATCAAATGATGACTACAGTAATGGTCGTTTTAATAATAACCAATCATTTAATCAGTCCCGAA
ACAATCAATCTCAGAACCAGAATAGCTTCAACTCAAATAATAATTTTGACAATGATCCATTCGATACAAGCAATAATGAT
GATATCGATATCTCAGATGATGATTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.685

100

0.538
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

61.988

0.368